YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|47132587
Organism:	Homo sapiens
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|47132587.

Description	E-value	Query Range	Subject Range
PRDBP_RAT - Protein kinase C delta-binding protein OS=Rattus norvegicus GN=Prkcdbp PE=1 SV=1	4.0E-92	[1..261]	[1..263]
gi\|114635872 - gi\|114635872\|ref\|XP_001164205.1\| PREDICTED: protein kinase C, delta binding protein isoform 2 [Pan t... gi\|119589139, gi... - gi\|15425753\|gb\|AAK97572.1\|AF339881_1 HSRBC protein [Homo sapiens], gi\|15420957\|gb\|AAK97528.1\|AF40819... gi\|123997647, gi... - gi\|123997647\|gb\|ABM86425.1\| protein kinase C, delta binding protein [synthetic construct], gi\|123982...	2.0E-91	[1..261]	[1..261]
PRDBP_MOUSE - Protein kinase C delta-binding protein OS=Mus musculus GN=Prkcdbp PE=1 SV=1	8.0E-86	[1..261]	[1..260]
PRDBP_BOVIN - Protein kinase C delta-binding protein OS=Bos taurus GN=PRKCDBP PE=2 SV=1	1.0E-83	[1..261]	[1..260]
gi\|109107543 - gi\|109107543\|ref\|XP_001101908.1\| PREDICTED: similar to protein kinase C, delta binding protein [Maca...	1.0E-83	[1..245]	[1..247]
gi\|73988716 - gi\|73988716\|ref\|XP_534035.2\| PREDICTED: similar to protein kinase C, delta binding protein [Canis fa...	1.0E-75	[1..261]	[1..263]
MURC - muscle-related coiled-coil protein	2.0E-65	[18..233]	[26..239]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRESALERGP VPEAPAGGPV HAVTVVTLLE KLASMLETLR ERQGGLARRQ GGLAGSVRRI  60
   61 QSGLGALSRS HDTTSNTLAQ LLAKAERVSS HANAAQERAV RRAAQVQRLE ANHGLLVARG 120
  121 KLHVLLFK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.899	N/A	N/A	f.17.1	F1F0 ATP synthase subunit C

Predicted Domain #2

Region A:
Residues: [129-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEGEVPASAF QKAPEPLGPA DQSELGPEQL EAEVGESSDE EPVESRAQRL RRTGLQKVQS  60
   61 LRRALSGRKG PAAPPPTPVK PPRLGPGRSA EAQPEAQPAL EPTLEPEPPQ DTEEDPGRPG 120
  121 AAEEALLQME SVA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits