YRC Public Data Repository - Protein Structure Prediction

Protein:	SSRG_RAT
Organism:	Rattus norvegicus
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSRG_RAT.

Description	E-value	Query Range	Subject Range
gi\|89266766, gi\|... - gi\|89266766\|emb\|CAJ81804.1\| signal sequence receptor, gamma (translocon-associated protein gamma) [X...	326.0	[0..1]	[185..1]
gi\|148235194, gi... - gi\|27735441\|gb\|AAH41301.1\| MGC53595 protein [Xenopus laevis], gi\|148235194\|ref\|NP_001080316.1\| hypot...	324.0	[0..1]	[185..1]
SSRG_BOVIN - Translocon-associated protein subunit gamma OS=Bos taurus GN=SSR3 PE=2 SV=1	323.0	[0..1]	[185..1]
SSRG_RAT - (Q08013) Translocon-associated protein, gamma subunit (TRAP-gamma) (Signal sequence receptor gamma s...	323.0	[0..1]	[185..1]
SSRG_PONAB - Translocon-associated protein subunit gamma OS=Pongo abelii GN=SSR3 PE=2 SV=1 SSRG_PONPY - Translocon-associated protein subunit gamma - Pongo pygmaeus (Orangutan)	321.0	[0..1]	[185..1]
CCDS3176.1_1 - null SSR3 - signal sequence receptor, gamma (translocon-associated protein gamma) gi\|90075752 - gi\|90075752\|dbj\|BAE87556.1\| unnamed protein product [Macaca fascicularis] gi\|61362748, gi\|... - gi\|61362755\|gb\|AAX42275.1\| signal sequence receptor gamma [synthetic construct], gi\|61362748\|gb\|AAX4... gi\|109048616 - gi\|109048616\|ref\|XP_001104823.1\| PREDICTED: similar to signal sequence receptor gamma subunit isofor... gi\|55621362 - gi\|55621362\|ref\|XP_516834.1\| PREDICTED: signal sequence receptor gamma subunit [Pan troglodytes]	320.0	[0..1]	[185..1]
gi\|50752556 - gi\|50752556\|ref\|XP_422829.1\| PREDICTED: hypothetical protein [Gallus gallus]	320.0	[0..1]	[185..1]
gi\|30584003, gi\|... - gi\|60654059\|gb\|AAX29722.1\| signal sequence receptor gamma [synthetic construct], gi\|30584003\|gb\|AAP3...	320.0	[0..1]	[185..1]
gi\|220673371, gi... - gi\|58801520\|ref\|NP_956347.1\| signal sequence receptor, gamma [Danio rerio], gi\|29126995\|gb\|AAH47859....	314.0	[0..1]	[185..1]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPKGGSKQQ SEEDLLLQDF SRNLSAKSSA LFFGNAFIVS AIPIWLYWRI WHMDLIQSAV  60
   61 LYSVMTLVST YLVAFAYKNV KFVLKHKVAQ KREDAVSKEV TRKLSEADNR KMSRKEKDER 120
  121 ILWKKNEVAD YEATTFSIFY NNTLFLVLVI VASFFILKNF NPTVNYILSI SASSGLIALL 180
  181 STGSK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	134.958607
Match:	PF07074.3
Description:	No description for PF07074.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits