YRC Public Data Repository - Protein Structure Prediction

Protein:	SERP1_RAT
Organism:	Rattus norvegicus
Length:	66 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SERP1_RAT.

Description	E-value	Query Range	Subject Range
gi\|94397677 - gi\|94397677\|ref\|XP_992688.1\| PREDICTED: similar to chromosome 13 open reading frame 21 [Mus musculus...	2.0E-30	[1..66]	[232..296]
gi\|76607912 - gi\|76607912\|ref\|XP_606511.2\| PREDICTED: similar to ribosome associated membrane protein 4 [Bos tauru...	3.0E-28	[1..66]	[138..203]
SERP2_MOUSE - Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus GN=Serp2 PE=3 SV=2 tr\|G1TBH8\|G1TBH8... - pep:novel chromosome:oryCun2:8:50609152:50634212:-1 gene:ENSOCUG00000016375 transcript:ENSOCUT000000... CCDS31965.1_1 - null gi\|109501894, gi... - gi\|149049994\|gb\|EDM02318.1\| similar to Chromosome 13 open reading frame 21 (predicted), isoform CRA_... SERP2 - stress-associated endoplasmic reticulum protein family member 2 gi\|169158972, gi... - gi\|169158972\|emb\|CAQ13670.1\| novel protein similar to H.sapiens SERP1, stress-associated endoplasmic... SERP2_BOVIN - Stress-associated endoplasmic reticulum protein 2 OS=Bos taurus GN=SERP2 PE=3 SV=1 gi\|111307928 - gi\|111307928\|gb\|AAI21496.1\| MGC146829 protein [Xenopus tropicalis]	7.0E-26	[1..66]	[1..65]
gi\|37703266 - gi\|37703266\|gb\|AAR01199.1\| RAMP4-2 [Mus musculus musculus]	1.0E-25	[1..66]	[1..65]
gi\|4585827 - gi\|4585827\|emb\|CAB40910.1\| ribosome associated membrane protein RAMP4 [Rattus norvegicus]	2.0E-25	[1..66]	[10..75]
gi\|51593231 - gi\|51593231\|gb\|AAH78563.1\| MGC85446 protein [Xenopus laevis]	3.0E-25	[1..66]	[1..66]
gi\|89269919, gi\|... - gi\|89269919\|emb\|CAJ81695.1\| stress-associated endoplasmic reticulum protein 1 [Xenopus tropicalis], ...	5.0E-25	[1..66]	[1..66]
gi\|29124441, gi\|... - gi\|47937938\|gb\|AAH71411.1\| Zgc:56419 protein [Danio rerio], gi\|41053319\|ref\|NP_956328.1\| ribosome as...	1.0E-24	[1..66]	[1..66]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAKQRIRMA NEKHSKNITQ RGNVAKTSRN APEEKASVGP WLLALFIFVV CGSAIFQIIQ  60
   61 SIRMGM

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	44.086186
Match:	PF06624.3
Description:	No description for PF06624.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits