YRC Public Data Repository - Protein Structure Prediction

Protein:	MYPR_RAT
Organism:	Rattus norvegicus
Length:	277 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MYPR_RAT.

Description	E-value	Query Range	Subject Range
gi\|109131742 - gi\|109131742\|ref\|XP_001088537.1\| PREDICTED: similar to proteolipid protein isoform 3 [Macaca mulatta...	463.0	[0..2]	[277..10]
MYPR_CANLF - Myelin proteolipid protein OS=Canis lupus familiaris GN=PLP1 PE=1 SV=2 gi\|149759650 - gi\|149759650\|ref\|XP_001493124.1\| PREDICTED: similar to proteolipid protein 1 isoform 2 [Equus caball...	461.0	[0..1]	[277..1]
gi\|197099744 - gi\|197099744\|ref\|NP_001126498.1\| proteolipid protein 1 [Pongo abelii] gi\|55731703 - gi\|55731703\|emb\|CAH92557.1\| hypothetical protein [Pongo abelii]	461.0	[0..1]	[277..1]
MYPR_MACFA - Myelin proteolipid protein OS=Macaca fascicularis GN=PLP1 PE=2 SV=3	461.0	[0..1]	[277..1]
MYPR_RABIT - Myelin proteolipid protein OS=Oryctolagus cuniculus GN=PLP1 PE=1 SV=2	461.0	[0..1]	[277..1]
MYPR_BOVIN - Myelin proteolipid protein OS=Bos taurus GN=PLP1 PE=1 SV=3	460.0	[0..1]	[277..1]
gi\|190085 - gi\|190085\|gb\|AAA60117.1\| proteolipid protein [Homo sapiens]	459.0	[0..1]	[277..1]
gi\|114689682 - gi\|114689682\|ref\|XP_001140782.1\| PREDICTED: hypothetical protein LOC465785 isoform 4 [Pan troglodyte...	458.0	[0..3]	[277..7]

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Predicted Domain #1

Region A:
Residues: [1-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLECCARC LVGAPFASLV ATGLCFFGVA LFCGCGHEAL TGTEKLIETY FSKNYQDYEY  60
   61 LINVIHAFQY VIYGTASFFF LYGALLLAEG FYTTGAVRQI FGDYKTTICG KGLSATVTGG 120
  121 QKGRGSRGQH QAHSLERVCH CLGKWLGHPD KFVGITYALT VVWLLVFACS AVPVYIYFNT 180
  181 WTTCQSIAFP SKTSASIGSL CADARMYGVL PWNAFPGKVC GSNLLSICKT AEFQMTFHLF 240
  241 IAAFVGAAAT LVSLLTFMIA ATYNFAVLKL MGRGTKF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits