YRC Public Data Repository - Protein Structure Prediction

Protein:	SELW_RAT
Organism:	Rattus norvegicus
Length:	88 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SELW_RAT.

Description	E-value	Query Range	Subject Range
C17orf37 - chromosome 17 open reading frame 37	2.585E7	[0..2]	[80..22]
SEPW1_SHEEP - Selenoprotein W - Ovis aries (Sheep)	2.585E7	[0..1]	[74..1]
SEPW1_PIG - Selenoprotein W - Sus scrofa (Pig)	2.585E7	[0..1]	[33..1]
gi\|23452030, gi\|... - gi\|23452030\|gb\|AAN32901.1\| selenoprotein SelW1 [Chlamydomonas reinhardtii], gi\|159471514\|ref\|XP_0016...	2.585E7	[0..3]	[83..4]
gi\|190336746, gi... - gi\|35903099\|ref\|NP_919398.1\| selenoprotein W, 2a [Danio rerio], gi\|29165352\|gb\|AAO65270.1\| selenopro...	2.585E7	[0..1]	[14..1]
MIEN1_MOUSE - Migration and invasion enhancer 1 OS=Mus musculus GN=Mien1 PE=1 SV=1	2.585E7	[0..2]	[48..22]

Back

Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALAVRVVYC GAUGYKPKYL QLKEKLEHEF PGCLDICGEG TPQVTGFFEV TVAGKLVHSK  60
   61 KRGDGYVDTE SKFRKLVTAI KAALAQCQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	pre 2.0c	PSIPRED	pre v2.61
SignalP	pre 3.0	COILS	1999
DISOPRED	pre v0.2	NCBI nr	circa 2005
PSI-BLAST	~2.2.10	FFAS	ffas
PDB	~2005	Pfam	16
HMMER	2.3.1

View Structure Prediction Details

Top Sequence Alignment Hits