YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149059845, gi...
Organism:	Rattus norvegicus
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149059845, gi....

Description	E-value	Query Range	Subject Range
gi\|169246080 - gi\|169246080\|gb\|ACA51057.1\| transmembrane protein 50B (predicted) [Callicebus moloch] gi\|195977122 - gi\|195977122\|gb\|ACG63670.1\| transmembrane protein 50B (predicted) [Otolemur garnettii] TM50B_PONAB - Transmembrane protein 50B OS=Pongo abelii GN=TMEM50B PE=2 SV=1 gi\|57108776 - gi\|57108776\|ref\|XP_535582.1\| PREDICTED: similar to Transmembrane protein 50B (HCV p7-transregulated ... gi\|67970122 - gi\|67970122\|dbj\|BAE01405.1\| unnamed protein product [Macaca fascicularis] TM50B_BOVIN - Transmembrane protein 50B OS=Bos taurus GN=TMEM50B PE=2 SV=1 gi\|114683958 - gi\|114683958\|ref\|XP_001166285.1\| PREDICTED: transmembrane protein 50B [Pan troglodytes] gi\|167427271 - gi\|167427271\|gb\|ABZ80250.1\| transmembrane protein 50B (predicted) [Callithrix jacchus] TM50B_PONPY - Transmembrane protein 50B - Pongo pygmaeus (Orangutan) TM50B_PAPAN - Transmembrane protein 50B OS=Papio anubis GN=TMEM50B PE=3 SV=1 gi\|109065463 - gi\|109065463\|ref\|XP_001091629.1\| PREDICTED: transmembrane protein 50B [Macaca mulatta] TMEM50B - transmembrane protein 50B gi\|177773076 - gi\|177773076\|gb\|ACB73271.1\| transmembrane protein 50B (predicted) [Rhinolophus ferrumequinum] gi\|149742155 - gi\|149742155\|ref\|XP_001498036.1\| PREDICTED: similar to Transmembrane protein 50B (HCV p7-trans-regul...	228.0	[0..1]	[158..1]
gi\|50729933 - gi\|50729933\|ref\|XP_416711.1\| PREDICTED: similar to C21orf4 [Gallus gallus]	227.0	[0..1]	[157..1]
gi\|213627808, gi... - gi\|89266844\|emb\|CAJ83988.1\| transmembrane protein 50b; C21orf4 [Xenopus tropicalis], gi\|62858809\|ref...	225.0	[0..1]	[158..1]
gi\|148229569, gi... - gi\|33417077\|gb\|AAH55980.1\| MGC68857 protein [Xenopus laevis], gi\|148229569\|ref\|NP_001079839.1\| hypot...	224.0	[0..1]	[158..1]
gi\|28475307, gi\|... - gi\|47209347\|emb\|CAF93322.1\| unnamed protein product [Tetraodon nigroviridis], gi\|29125851\|emb\|CAD794...	217.0	[0..1]	[157..1]
gi\|27882119, gi\|... - gi\|47087235\|ref\|NP_998694.1\| transmembrane protein 50A [Danio rerio], gi\|27882119\|gb\|AAH44368.1\| Tra...	210.0	[0..1]	[157..1]
TM50A_MOUSE - Transmembrane protein 50A OS=Mus musculus GN=Tmem50a PE=1 SV=1 gi\|55715750 - gb\|AAH86147.1\| Unknown (protein for MGC:98565) [Xenopus laevis]	205.0	[0..1]	[157..1]
gi\|114575620 - gi\|114575620\|ref\|XP_001138153.1\| PREDICTED: small membrane protein 1 isoform 4 [Pan troglodytes] gi\|55729330 - gi\|55729330\|emb\|CAH91399.1\| hypothetical protein [Pongo abelii] ENSMMUT000000474... - null, null gi\|197097500 - gi\|197097500\|ref\|NP_001127413.1\| transmembrane protein 50A [Pongo abelii]	202.0	[0..1]	[157..1]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGFLDNFRW PECECIDWSE RRNTVASVVA GILFFTGWWI MIDAAVVYPK PEQLNHAFHT  60
   61 CGVFSTLAFF MINAVSNAQV RGDSYESGCL GRTGARVWLF IGFMLMFGSL IASMWILFGA 120
  121 YVTQNIDVYP GLAVFFQNAL IFFSTLIYKF GRTEELWA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	106.091515
Match:	PF05255.2
Description:	No description for PF05255.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits