YRC Public Data Repository - Protein Structure Prediction

Protein:	RCD1_RAT
Organism:	Rattus norvegicus
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RCD1_RAT.

Description	E-value	Query Range	Subject Range
gi\|74005731 - gi\|74005731\|ref\|XP_853052.1\| PREDICTED: similar to rcd1 (required for cell differentiation) homolog ...	551.0	[0..1]	[299..139]
RCD1_XENLA - Cell differentiation protein RCD1 homolog OS=Xenopus laevis GN=rqcd1 PE=2 SV=1 RCD1_XENTR - Cell differentiation protein RCD1 homolog OS=Xenopus tropicalis GN=rqcd1 PE=2 SV=1	529.0	[0..1]	[299..1]
gi\|114583332 - gi\|114583332\|ref\|XP_001157955.1\| PREDICTED: RCD1 required for cell differentiation1 homolog [Pan tro... RCD1_PONAB - Cell differentiation protein RCD1 homolog OS=Pongo abelii GN=RQCD1 PE=2 SV=2 RQCD1 - RCD1 required for cell differentiation1 homolog (S. pombe)	529.0	[0..1]	[299..1]
gi\|197097646 - gi\|197097646\|ref\|NP_001126453.1\| RCD1 required for cell differentiation1 homolog [Pongo abelii] gi\|55731505 - gi\|55731505\|emb\|CAH92464.1\| hypothetical protein [Pongo abelii]	528.0	[0..1]	[299..1]
gi\|47226808 - gi\|47226808\|emb\|CAG06650.1\| unnamed protein product [Tetraodon nigroviridis]	513.0	[0..4]	[299..2]
RCD1_DANRE - Cell differentiation protein RCD1 homolog OS=Danio rerio GN=rqcd1 PE=2 SV=1	500.0	[0..4]	[299..2]
gi\|115894628, gi... - gi\|115971054\|ref\|XP_001176363.1\| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpur...	488.0	[0..6]	[299..14]
gi\|116117043, gi... - gi\|118792741\|ref\|XP_320477.3\| ENSANGP00000015668 [Anopheles gambiae str. PEST], gi\|116117043\|gb\|EAA0...	481.0	[0..13]	[298..7]
gi\|108877279, gi... - gi\|157114475\|ref\|XP_001652289.1\| hypothetical protein AaeL_AAEL006867 [Aedes aegypti], gi\|108877279\|...	481.0	[0..6]	[298..3]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSLATAAPV PTALAQVDRE KIYQWINELS SPETRENALL ELSKKRESVP DLAPMLWHSF  60
   61 GTIAALLQEI VNIYPSINPP TLTAHQSNRV CNALALLQCV ASHPETRSAF LAAHIPLFLY 120
  121 PFLHTVSKTR PFEYLRLTSL GVIGALVKTD EQEVINFLLT TEIIPLCLRI MESGSELSKT 180
  181 VATFILQKIL LDDTGLAYIC QTYERFSHVA MILGKMVLQL SKEPSARLLK HVVRCYLRLS 240
  241 DNPRAREALR QCLPDQLKDT TFAQVLKDDT TTKRWLAQLV KNLQEGQVTD PRGIPLPPQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	136.0
Match:	2fv2A
Description:	No description for 2fv2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits