YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|34871030, gi\|...
Organism:	Rattus norvegicus
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34871030, gi|....

Description	E-value	Query Range	Subject Range
gi\|74179107 - gi\|74179107\|dbj\|BAE42755.1\| unnamed protein product [Mus musculus]	145.0	[0..1]	[98..1]
RNK_BOVIN - Ribonuclease kappa OS=Bos taurus GN=RNASEK PE=3 SV=1	144.0	[0..1]	[98..1]
gi\|73955354 - gi\|73955354\|ref\|XP_848624.1\| PREDICTED: similar to CG40127-PA.3 isoform 1 [Canis familiaris]	141.0	[0..1]	[98..1]
gi\|190657091, gi... - gi\|194877574\|ref\|XP_001973904.1\| GG21385 [Drosophila erecta], gi\|190657091\|gb\|EDV54304.1\| GG21385 [D... gi\|194123557, gi... - gi\|195356931\|ref\|XP_002044882.1\| GM11704 [Drosophila sechellia], gi\|194123557\|gb\|EDW45600.1\| GM11704... gi\|194185753, gi... - gi\|195476068\|ref\|XP_002085971.1\| GE22683 [Drosophila yakuba], gi\|194185753\|gb\|EDW99364.1\| GE22683 [D... gi\|195552325, gi... - gi\|195552325\|ref\|XP_002076431.1\| GD17680 [Drosophila simulans], gi\|194201684\|gb\|EDX15260.1\| GD17680 ... CG40127-PA, FBpp... - This gene is referred to in FlyBase by the symbol Dmel\CG40127 (CG40127, FBgn0058127). It is a prote... gi\|220947660, gi... - gi\|220956960\|gb\|ACL91023.1\| CG40127-PA [synthetic construct], gi\|220947660\|gb\|ACL86373.1\| CG40127-PA...	138.0	[0..4]	[92..1]
RNKB_CERCA - Ribonuclease kappa-B OS=Ceratitis capitata PE=3 SV=1	137.0	[0..4]	[92..1]
gi\|157136620, gi... - gi\|94468548\|gb\|ABF18123.1\| salivary secreted ribonuclease [Aedes aegypti], gi\|157136620\|ref\|XP_00166...	136.0	[0..4]	[92..1]
gi\|118787979, gi... - gi\|118787979\|ref\|XP_316423.3\| AGAP006389-PA [Anopheles gambiae str. PEST], gi\|116127059\|gb\|EAA11171.... AGAP006389-PA - Ribonuclease kappa\|protein_coding\|2L:31049425:31049953:-1\|gene:AGAP006389	136.0	[0..4]	[92..1]
RNKB_XENLA - Ribonuclease kappa-B OS=Xenopus laevis GN=rnasek-b PE=3 SV=1	132.0	[0..1]	[98..1]
CE03372 - status:Confirmed UniProt:Q20589 protein_id:CAA92515.1	131.0	[0..5]	[91..6]
RNKA_DANRE - Ribonuclease kappa-A OS=Danio rerio GN=rnaseka PE=3 SV=1	128.0	[0..1]	[97..1]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLLCCGPK LAACGIVLSA WGVIMLIMLG IFFNVHSAVL IEDVPFTEKD FENGPQNIYN  60
   61 LYEQVSYNCF IAAGLYLLLG GFSFCQVRLN KRKEYMVR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits