YRC Public Data Repository - Protein Structure Prediction

Protein:	TPPC1_RAT
Organism:	Rattus norvegicus
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TPPC1_RAT.

Description	E-value	Query Range	Subject Range
tr\|G1TDG9\|G1TDG9... - pep:novel chromosome:oryCun2:19:11275596:11276772:1 gene:ENSOCUG00000017332 transcript:ENSOCUT000000... gi\|73955584, gi\|... - gi\|73955590\|ref\|XP_859798.1\| PREDICTED: similar to trafficking protein particle complex 1 isoform 5 ... gi\|109113165, gi... - gi\|109113165\|ref\|XP_001111325.1\| PREDICTED: similar to trafficking protein particle complex 1 isofor... TPPC1_BOVIN - Trafficking protein particle complex subunit 1 OS=Bos taurus GN=TRAPPC1 PE=2 SV=1 ENSCJAT00000028718 - null gi\|149724275 - gi\|149724275\|ref\|XP_001504850.1\| PREDICTED: similar to trafficking protein particle complex 1 [Equus... tr\|M3WYU8\|M3WYU8... - Trafficking protein particle complex 1 OS=Felis catus GN=TRAPPC1 PE=4 SV=1 TRAPPC1, TPCN1 - trafficking protein particle complex 1, two pore segment channel 1 gi\|114666264 - gi\|114666264\|ref\|XP_001172364.1\| PREDICTED: trafficking protein particle complex 1 [Pan troglodytes] CCDS11125.1_1 - null gi\|123979914 - gi\|123979914\|gb\|ABM81786.1\| trafficking protein particle complex 1 [synthetic construct]	189.0	[0..1]	[145..1]
gi\|148235479, gi... - gi\|49522147\|gb\|AAH74246.1\| MGC83988 protein [Xenopus laevis], gi\|148235479\|ref\|NP_001086138.1\| MGC83...	185.0	[0..1]	[145..1]
gi\|89268748, gi\|... - gi\|89268748\|emb\|CAJ82631.1\| trafficking protein particle complex 1 [Xenopus tropicalis], gi\|56118869...	184.0	[0..1]	[145..1]
gi\|57526527, gi\|... - gi\|57526527\|ref\|NP_001002742.1\| trafficking protein particle complex 1 [Danio rerio], gi\|49901436\|gb...	182.0	[0..1]	[145..1]
gi\|62901898 - gi\|62901898\|gb\|AAY18900.1\| MUM2 [synthetic construct]	182.0	[0..2]	[145..26]
gi\|91094761 - gi\|91094761\|ref\|XP_966940.1\| PREDICTED: similar to trafficking protein particle complex 1 [Tribolium...	177.0	[0..1]	[144..1]
gi\|48098382, gi\|... - ref\|XP_394057.1\| similar to CG1359-PA [Apis mellifera], gi\|110763712\|ref\|XP_001121268.1\| PREDICTED: ...	177.0	[0..1]	[144..1]
gi\|87248423, gi\|... - gi\|87248423\|gb\|ABD36264.1\| trafficking protein particle complex 1 [Bombyx mori], gi\|114052112\|ref\|NP...	175.0	[0..1]	[144..1]
gi\|194905627, gi... - gi\|194905627\|ref\|XP_001981228.1\| GG11737 [Drosophila erecta], gi\|190655866\|gb\|EDV53098.1\| GG11737 [D... gi\|195505102, gi... - gi\|195505102\|ref\|XP_002099364.1\| GE10864 [Drosophila yakuba], gi\|194185465\|gb\|EDW99076.1\| GE10864 [D... Bet5-PA - This gene is referred to in FlyBase by the symbol Dmel\Bet5 (CG1359, FBgn0260860). It is a protein_c...	173.0	[0..1]	[143..1]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVHNLYLFD RNGVCLHYSE WHRKKQAGIP KEEEYKLMYG MLFSIRSFVS KMSPLDMKDG  60
   61 FLSFQTSRYK LHYYETPTGI KVVMNTDLGV GPIRDVLHHI YSALYVEFVV KNPLCPLGQT 120
  121 VQSELFRSRL DSYVRSLPFF SARAG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.69897
Match:	2j3tC
Description:	No description for 2j3tC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits