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View Structure Prediction Details

Protein: NH2L1_RAT
Organism: Rattus norvegicus
Length: 128 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NH2L1_RAT.

Description E-value Query
Range		 Subject
Range
gi|114686706 - gi|114686706|ref|XP_515161.2| PREDICTED: similar to nuclear protein-NHP2-like protein [Pan troglodyt...
 3.0E-38 [1..128] [145..272]
gi|68369170, gi|... - gi|68369170|ref|XP_702270.1| PREDICTED: hypothetical protein XP_697178 [Danio rerio], gi|42542508|gb...
 2.0E-36 [1..128] [1..128]
NH2L1_XENLA - NHP2-like protein 1 OS=Xenopus laevis GN=snu13 PE=2 SV=1
 2.0E-36 [1..128] [1..128]
NH2L1_XENTR - NHP2-like protein 1 OS=Xenopus tropicalis GN=snu13 PE=2 SV=1
 2.0E-36 [1..128] [1..128]
gi|86279704 - gi|86279704|gb|ABC94507.1| NHP2 non-histone chromosome protein 2-like 1 [Ictalurus punctatus]
 3.0E-36 [1..128] [1..128]
gi|47226061 - gi|47226061|emb|CAG04435.1| unnamed protein product [Tetraodon nigroviridis]
 7.0E-36 [2..128] [1..127]

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Predicted Domain #1
Region A:
Residues: [1-128] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEADVNPKA YPLADAHLTK KLLDLVQQSC NYKQLRKGAN EATKTLNRGI SEFIVMAADA  60
   61 EPLEIILHLP LLCEDKNVPY VFVRSKQALG RACGVSRPVI ACSVTIKEGS QLKQQIQSIQ 120
  121 QSIERLLV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.09691
Match: 2ozbA
Description: No description for 2ozbA was found.

Predicted functions:

Term Confidence Notes
5.75333813716704 bayes_pls_golite062009
RNA binding 5.39762744650785 bayes_pls_golite062009
snoRNA binding 4.95788328272916 bayes_pls_golite062009
structural constituent of ribosome 3.68798692352408 bayes_pls_golite062009
structural molecule activity 3.12718364266877 bayes_pls_golite062009
mRNA binding 2.62944559104613 bayes_pls_golite062009
nucleic acid binding 2.39301463005357 bayes_pls_golite062009
binding 2.34187530323842 bayes_pls_golite062009
protein binding 0.381324299701367 bayes_pls_golite062009
catalytic activity 0.264002643439785 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle