YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|27710456, gi\|...
Organism:	Rattus norvegicus
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|27710456, gi|....

Description	E-value	Query Range	Subject Range
gi\|73968420 - gi\|73968420\|ref\|XP_531640.2\| PREDICTED: similar to nascent polypeptide-associated complex alpha poly...	252.0	[0..1]	[215..165]
gi\|74207780 - gi\|74207780\|dbj\|BAE40130.1\| unnamed protein product [Mus musculus]	224.0	[0..1]	[215..1]
NACA2 - nascent polypeptide-associated complex alpha subunit 2	223.0	[0..1]	[215..1]
gi\|55645751 - gi\|55645751\|ref\|XP_511608.1\| PREDICTED: similar to NACA2 [Pan troglodytes]	220.0	[0..1]	[215..1]
NACA_CHILA - Nascent polypeptide-associated complex subunit alpha OS=Chinchilla lanigera PE=2 SV=1	214.0	[0..1]	[215..1]
NACA_BOVIN - Nascent polypeptide-associated complex subunit alpha OS=Bos taurus GN=NACA PE=1 SV=1	213.0	[0..1]	[215..1]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGEATETVP ATEQELPQPQ AETGSGTESD SDESVPELEE QDSTQTATQQ AQLAAAAEID  60
   61 EEPVSKAKQS RSEKKARKAM SKLGLRQVTG VTRVTIRKSK NILFVITKPD VYKSPASDTY 120
  121 IVFGEAKIED LSQQAQLAAA EKFKVQGEAV SNIQENTQTP TVQEESEEEE VDETGVEVKD 180
  181 IELVMSQANV SRAKAVRALK NNSNDIVNAI MELTM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.522879
Match:	1tr8A
Description:	Crystal Structure of archaeal Nascent Polypeptide-associated Complex (aeNAC)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits