YRC Public Data Repository - Protein Structure Prediction

Protein:	TPPC3_RAT
Organism:	Rattus norvegicus
Length:	180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TPPC3_RAT.

Description	E-value	Query Range	Subject Range
gi\|114555735 - gi\|114555735\|ref\|XP_513093.2\| PREDICTED: similar to bet3 [Pan troglodytes]	341.0	[0..1]	[180..46]
gi\|60593497 - gi\|60593497\|pdb\|1SZ7\|A Chain A, Crystal Structure Of Human Bet3	336.0	[0..2]	[180..11]
TPPC3_CHICK - Trafficking protein particle complex subunit 3 OS=Gallus gallus GN=TRAPPC3 PE=2 SV=1	334.0	[0..1]	[180..1]
gi\|73977068 - gi\|73977068\|ref\|XP_539594.2\| PREDICTED: similar to trafficking protein particle complex 3 (predicted...	334.0	[0..1]	[180..1]
gi\|62901828 - gi\|62901828\|gb\|AAY18865.1\| bet3 [synthetic construct]	333.0	[0..3]	[180..14]
gi\|89271912, gi\|... - gi\|89271912\|emb\|CAJ83649.1\| trafficking protein particle complex 3 [Xenopus tropicalis], gi\|62857629...	333.0	[0..1]	[180..1]
gi\|148230479, gi... - gi\|32450223\|gb\|AAH53802.1\| Trappc3-prov protein [Xenopus laevis], gi\|148230479\|ref\|NP_001080521.1\| t...	332.0	[0..1]	[180..1]
gi\|125845462, gi... - gi\|94733297\|emb\|CAK05319.1\| novel protein similar to vertebrate trafficking protein particle complex...	326.0	[0..1]	[180..1]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRQANRGTE SKKMSSELFT LTYGALVTQL CKDYENDEDV NKQLDRMGYN IGVRLIEDFL  60
   61 ARSNVGRCHD FRETADVIAK VAFKMYLGIT PSITNWSPAG DEFSLILENN PLVDFVELPD 120
  121 NHSALIYSNL LCGVLRGALE MVQMAVEAKF VQDTLKGDGV TEIRMRFIRR IEDNLPAGEE 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	92.69897
Match:	1sz7A
Description:	Crystal structure of Human Bet3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits