YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|27708964, gi\|...
Organism:	Rattus norvegicus
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|27708964, gi|....

Description	E-value	Query Range	Subject Range
gi\|94419740, gi\|... - gi\|94419740\|ref\|XP_001001548.1\| PREDICTED: similar to X-linked eukaryotic translation initiation fac...	177.0	[0..1]	[144..1]
gi\|68359915, gi\|... - gi\|68359915\|ref\|XP_694296.1\| PREDICTED: similar to eukaryotic translation initiation factor 1A, Y-li...	177.0	[0..1]	[144..1]
gi\|124804794, gi... - gi\|23508634\|ref\|NP_701303.1\| translation initiation factor eIF-1A, putative [Plasmodium falciparum 3...	173.0	[0..1]	[144..1]
gi\|83320111, gi\|... - gi\|83320111\|ref\|NP_001020500.1\| eukaryotic translation initiation factor 1A, X-linked [Bos taurus], ...	172.0	[0..1]	[131..1]
gi\|30584999, gi\|... - gi\|61371489\|gb\|AAX43676.1\| eukaryotic translation initiation factor 1A X-linked [synthetic construct...	172.0	[0..1]	[131..1]
gi\|3264536, gi\|2... - emb\|CAA17281.1\| dJ163M9.1 (protein synthesis factor) [Homo sapiens], gi\|25167328\|sp\|O75642\|IF1AH_HU...	171.0	[0..1]	[131..1]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKNKGKGGK NRRRGKNENE SEKRELVFKE DGQEYAQVIK MLGNGRLEAM CFDGVKRLCH  60
   61 IRGKLRKKVW INTSDIILVG LRDYQDNKAD VILKYNADEA RSLKAYGELP EHAKINETDT 120
  121 FGPGDDDEIQ FDDIGDDDED IDDI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.221849
Match:	1d7qA
Description:	Translation initiation factor-1a, eIF1a
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits