YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|109470613, gi...
Organism:	Rattus norvegicus
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109470613, gi....

Description	E-value	Query Range	Subject Range
gi\|157829621, gi... - gi\|5107800\|pdb\|1914\| Chain , Signal Recognition Particle Alu Rna Binding Heterodimer, Srp914, gi\|1...	155.0	[0..1]	[110..20]
gi\|31543653, gi\|... - gi\|31543653\|ref\|NP_003125.2\| signal recognition particle 14kDa (homologous Alu RNA binding protein) ...	150.0	[0..1]	[101..1]
gi\|55727961 - gi\|55727961\|emb\|CAH90733.1\| hypothetical protein [Pongo abelii] SRP14_PONAB - Signal recognition particle 14 kDa protein OS=Pongo abelii GN=SRP14 PE=2 SV=1 SRP14 - signal recognition particle 14kDa (homologous Alu RNA binding protein) gi\|114656316, gi... - gi\|114656316\|ref\|XP_001140418.1\| PREDICTED: hypothetical protein LOC737573 isoform 2 [Pan troglodyte...	150.0	[0..1]	[101..1]
SRP14_MACFA - Signal recognition particle 14 kDa protein OS=Macaca fascicularis GN=SRP14 PE=2 SV=1 gi\|109080612 - gi\|109080612\|ref\|XP_001093160.1\| PREDICTED: similar to signal recognition particle 14kDa (homologous...	150.0	[0..1]	[102..1]
SRP14_CANLF - Signal recognition particle 14 kDa protein OS=Canis lupus familiaris GN=SRP14 PE=1 SV=2	149.0	[0..1]	[110..1]
gi\|165940932 - gi\|165940932\|gb\|ABY75311.1\| SRP14-like protein [Ovis aries] tr\|M3X2B7\|M3X2B7... - Signal recognition particle 14 OS=Felis catus GN=SRP14 PE=4 SV=1 SRP14_BOVIN - Signal recognition particle 14 kDa protein OS=Bos taurus GN=SRP14 PE=3 SV=1 gi\|149692072 - gi\|149692072\|ref\|XP_001503633.1\| PREDICTED: similar to SRP14 [Equus caballus] ENSOCUP000000194... - pep:novel chromosome:oryCun2:17:32031553:32034524:1 gene:ENSOCUG00000024384 transcript:ENSOCUT000000...	146.0	[0..1]	[94..1]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLLESEQFL TELTRLFQKC RSSGSVFITL KKYDGRTKPI PRKSSVEGLE PAENKCLLRA  60
   61 TDGKRKISTV VSSKEVNKFQ MAYSNLLRAN MDGLKKRDKK NKSKKSKPAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.522879
Match:	1914A
Description:	SIGNAL RECOGNITION PARTICLE ALU RNA BINDING HETERODIMER, SRP9/14
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits