YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|109470017, gi...
Organism:	Rattus norvegicus
Length:	326 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109470017, gi....

Description	E-value	Query Range	Subject Range
gi\|9937982, gi\|2... - ref\|NP_064679.1\| UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 [Mus musculus], g...	6.0E-92	[1..326]	[1..326]
gi\|74004809 - gi\|74004809\|ref\|XP_545508.2\| PREDICTED: similar to Beta-1,3-galactosyltransferase 1 (Beta-1,3-GalTas...	8.0E-92	[1..326]	[1..326]
gi\|76679380 - gi\|76679380\|ref\|XP_584336.2\| PREDICTED: similar to UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase...	1.0E-91	[1..326]	[1..326]
gi\|50750565 - gi\|50750565\|ref\|XP_426584.1\| PREDICTED: similar to beta 1,3-galactosyltransferase polypeptide 1 [Gal...	3.0E-89	[1..326]	[1..326]
gi\|68439079 - gi\|68439079\|ref\|XP_699646.1\| PREDICTED: similar to UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase...	1.0E-82	[1..326]	[1..331]
gi\|47218632 - gi\|47218632\|emb\|CAG04961.1\| unnamed protein product [Tetraodon nigroviridis]	2.0E-80	[1..326]	[1..328]
gi\|62088614 - gi\|62088614\|dbj\|BAD92754.1\| beta-1,3-N-acetylglucosaminyltransferase bGnT-5 variant [Homo sapiens]	7.0E-73	[3..324]	[13..344]

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Predicted Domain #1

Region A:
Residues: [1-326]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKVSCLYV LTVVCWASAL WYLSITRPTS SYTGSKPFSH LTVARKNFTF GNIRTRPINP  60
   61 HSFEFLINEP NKCEKNIPFL VILISTTHKE FDARQAIRET WGDENNFKGI KIATLFLLGK 120
  121 NADPVLNQMV EQESQIFHDI IVEDFIDSYH NLTLKTLMGM RWVATFCSKA KYVMKTDSDI 180
  181 FVNMDNLIYK LLKPSTKPRR RYFTGYVING GPIRDVRSKW YMPRDLYPDS NYPPFCSGTG 240
  241 YIFSADVAEL IYKTSLHTRL LHLEDVYVGL CLRKLGIHPF QNSGFNHWKM AYSLCRYRRV 300
  301 ITVHQISPEE MHRIWNDMSS KKHLRC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	2j0aA
Description:	No description for 2j0aA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits