YRC Public Data Repository - Protein Structure Prediction

Protein:	RL35_RAT
Organism:	Rattus norvegicus
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL35_RAT.

Description	E-value	Query Range	Subject Range
gi\|32422927, gi\|... - gi\|32422927\|ref\|XP_331907.1\| hypothetical protein [Neurospora crassa], gi\|28927290\|gb\|EAA36245.1\| hy... gi\|85118601 - gi\|85118601\|ref\|XP_965481.1\| hypothetical protein [Neurospora crassa OR74A]	184.0	[0..3]	[122..5]
gi\|55632305 - gi\|55632305\|ref\|XP_520251.1\| PREDICTED: similar to ribosomal protein L35 [Pan troglodytes]	176.0	[0..3]	[123..77]
gi\|76626602 - gi\|76626602\|ref\|XP_874679.1\| PREDICTED: similar to 60S ribosomal protein L35 [Bos taurus]	153.0	[0..2]	[123..22]
gi\|109035869 - gi\|109035869\|ref\|XP_001098311.1\| PREDICTED: similar to 60S ribosomal protein L35 [Macaca mulatta]	151.0	[0..1]	[123..1]
gi\|62656848, gi\|... - gi\|62656848\|ref\|XP_220862.3\| PREDICTED: similar to 60S ribosomal protein L35 [Rattus norvegicus], gi...	150.0	[0..1]	[122..1]
RL35_OPHHA - 60S ribosomal protein L35 OS=Ophiophagus hannah GN=RPL35 PE=2 SV=3	148.0	[0..1]	[123..1]
gi\|61369385 - gi\|61369385\|gb\|AAX43327.1\| ribosomal protein L35 [synthetic construct]	148.0	[0..1]	[123..1]
CCDS6858.1_1 - null gi\|187609321 - gi\|187609321\|pdb\|2ZKR\|VV Chain v, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Compl... gi\|149738325 - gi\|149738325\|ref\|XP_001502098.1\| PREDICTED: similar to ribosomal protein L35 [Equus caballus] gi\|109110243 - gi\|109110243\|ref\|XP_001082318.1\| PREDICTED: similar to 60S ribosomal protein L35 [Macaca mulatta] RPL35 - ribosomal protein L35 ENSPTRT00000039513 - null gi\|123980920, gi... - gi\|61359253\|gb\|AAX41689.1\| ribosomal protein L35 [synthetic construct], gi\|123995735\|gb\|ABM85469.1\| ...	148.0	[0..1]	[123..1]
RL35_CHICK - 60S ribosomal protein L35 OS=Gallus gallus GN=RPL35 PE=2 SV=3	147.0	[0..1]	[123..1]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKIKARDLR GKKKEELLKQ LDDLKVELSQ LRVAKVTGGA ASKLSKIRVV RKSIARVLTV  60
   61 INQTQKENLR KFYKGKKYKP LDLRPKKTRA MRRRLTKHEE KLKTKKQQRK ERLYPLRKYA 120
  121 VKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.522879
Match:	2go55
Description:	No description for 2go55 was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits