YRC Public Data Repository - Protein Structure Prediction

Protein:	HIKES_RAT
Organism:	Rattus norvegicus
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HIKES_RAT.

Description	E-value	Query Range	Subject Range
C11orf73 - chromosome 11 open reading frame 73 gi\|123998603, gi... - gi\|123998603\|gb\|ABM86903.1\| chromosome 11 open reading frame 73 [synthetic construct], gi\|123984623\|... gi\|114639664, gi... - gi\|114639664\|ref\|XP_001175309.1\| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes], gi\|114... gi\|109108177 - gi\|109108177\|ref\|XP_001102946.1\| PREDICTED: similar to CG13926-PA isoform 4 [Macaca mulatta]	288.0	[0..1]	[197..1]
gi\|12848743 - gi\|12848743\|dbj\|BAB28072.1\| unnamed protein product [Mus musculus]	287.0	[0..1]	[197..1]
HIKES_BOVIN - Protein Hikeshi OS=Bos taurus PE=2 SV=1	287.0	[0..1]	[197..1]
gi\|57102310 - gi\|57102310\|ref\|XP_533984.1\| PREDICTED: similar to CG13926-PA isoform 1 [Canis familiaris]	286.0	[0..1]	[197..1]
CK073_CHICK - Uncharacterized protein C11orf73 homolog OS=Gallus gallus GN=RCJMB04_13p7 PE=2 SV=1	269.0	[0..1]	[197..1]
HIKES_XENLA - Protein Hikeshi OS=Xenopus laevis PE=2 SV=1	268.0	[0..1]	[197..1]
gi\|114639668 - gi\|114639668\|ref\|XP_001175302.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	265.0	[0..1]	[197..1]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGCLVAGRL VQTAAQQVAE DKFVFDLPDY ENINHVVVFM LGTIPFPEGM GGSVYFSYPD  60
   61 SNGVPVWQLL GFVTNGKPSA IFKISGLKSG EGSQHPFGAM NIVRTPSVAQ IGISVELLDS 120
  121 LAQQTPVGSA AVSSVDSFTQ FTQKMLDNFY NFASSFALSQ AQMTPNPSEM FIPANVVLKW 180
  181 YENFQRRLAQ NPLFWKT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	80.251812
Match:	PF05603.3
Description:	No description for PF05603.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits