YRC Public Data Repository - Protein Structure Prediction

Protein:	COA4_MOUSE
Organism:	Mus musculus
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COA4_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109462508, gi... - gi\|109462508\|ref\|XP_001067013.1\| PREDICTED: similar to coiled-coil-helix-coiled-coil-helix domain co...	140.0	[0..1]	[87..60]
gi\|189054277, gi... - gi\|7331256\|gb\|AAF60345.1\|AF242180_1 E2IG2 [Homo sapiens], gi\|189054277\|dbj\|BAG36797.1\| unnamed prote...	125.0	[0..1]	[87..10]
gi\|148684509, gi... - gi\|66794580\|gb\|AAH96605.1\| Chchd8 protein [Mus musculus], gi\|148684509\|gb\|EDL16456.1\| coiled-coil-he...	120.0	[0..1]	[87..1]
gi\|109107789 - gi\|109107789\|ref\|XP_001110707.1\| PREDICTED: similar to coiled-coil-helix-coiled-coil-helix domain co... CCDS8225.1_1 - null	112.0	[0..1]	[87..1]
COA4 - Protein that localizes to the mitochondrial intermembrane space via the Mia40p-Erv1p system; mutants... COA4_YEAST - Cytochrome oxidase assembly factor 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COA... gi\|190405283 - gi\|190405283\|gb\|EDV08550.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	103.0	[0..17]	[73..76]
gi\|44982746, gi\|... - gi\|45187962\|ref\|NP_984185.1\| ADR089Cp [Ashbya gossypii ATCC 10895], gi\|44982746\|gb\|AAS52009.1\| ADR08... gi\|44982746 - gi\|44982746\|gb\|AAS52009.1\| ADR089Cp [Ashbya gossypii ATCC 10895]	90.0	[0..17]	[73..19]
SPCC550.01c - CHCH domain protein YJV1_SCHPO - Coiled-coil-helix-coiled-coil-helix domain-containing protein C550.01c OS=Schizosaccharomyces pombe ...	82.0	[0..18]	[68..11]
gi\|50310587, gi\|... - gi\|50310587\|ref\|XP_455313.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644449\|emb\|CAG9802... gi\|49644449\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140]	82.0	[0..18]	[73..20]
gi\|49527410 - gi\|49527410\|emb\|CAG61050.1\| unnamed protein product [Candida glabrata] gi\|50291333, gi\|... - gi\|50291333\|ref\|XP_448099.1\| unnamed protein product [Candida glabrata], gi\|49527410\|emb\|CAG61050.1\|...	79.0	[0..16]	[73..21]

Back

Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSVPQGHN WTRPVKKDDD EEDPLDQLIT RSGCAASHFA VQECMAQHQD WRQCQPQVQA  60
   61 FRDCMSAQQA RRREELQRRK EQASAQH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.929	a.2.15	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits