YRC Public Data Repository - Protein Structure Prediction

Protein:	VKORL_MOUSE
Organism:	Mus musculus
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VKORL_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|73957599 - gi\|73957599\|ref\|XP_848485.1\| PREDICTED: similar to vitamin K epoxide reductase complex, subunit 1-li...	275.0	[0..1]	[176..1]
gi\|114613750 - gi\|114613750\|ref\|XP_527770.2\| PREDICTED: vitamin K epoxide reductase complex, subunit 1-like 1 [Pan ... VKORC1L1 - vitamin K epoxide reductase complex, subunit 1-like 1	275.0	[0..1]	[176..1]
gi\|109066407 - gi\|109066407\|ref\|XP_001088069.1\| PREDICTED: similar to vitamin K epoxide reductase complex, subunit ...	274.0	[0..1]	[176..1]
gi\|74136163, gi\|... - gi\|74136163\|ref\|NP_001027940.1\| Vkorc1-like protein 1 [Takifugu rubripes], gi\|40217981\|gb\|AAR82913.1...	260.0	[0..1]	[176..1]
gi\|47223764 - gi\|47223764\|emb\|CAF98534.1\| unnamed protein product [Tetraodon nigroviridis]	257.0	[0..1]	[176..1]
gi\|66472370, gi\|... - gi\|66472370\|ref\|NP_001018524.1\| vitamin K epoxide reductase complex, subunit 1-like 1 [Danio rerio],...	256.0	[0..1]	[176..1]
gi\|50838834 - gi\|50838834\|ref\|NP_001001328.1\| vitamin K epoxide reductase complex, subunit 1-like 1 [Gallus gallus...	252.0	[0..1]	[176..1]
gi\|89267457 - gi\|89267457\|emb\|CAJ81550.1\| vitamin K epoxide reductase complex, subunit 1-like 1 [Xenopus tropicali...	240.0	[0..1]	[176..1]
gi\|67678267 - gi\|67678267\|gb\|AAH97808.1\| LOC733276 protein [Xenopus laevis]	221.0	[0..13]	[176..1]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPVLLRVS VPRWERVARY AVCAAGILLS IYAYHVEREK ERDPEHRALC DLGPWVKCSA  60
   61 ALASRWGRGF GLLGSIFGKD GVLNQPNSVF GLIFYILQLL L

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	5.318759
Match:	PF07884.5
Description:	No description for PF07884.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [102-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GMTASAVAAL VLMTSSIVSV VGSLYLAYIL YFVLKEFCII CVTTYVLNFL LLIINYKRLV  60
   61 YLNEAWKRQL QPKED

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.984
Match:	2hi7B
Description:	No description for 2hi7B was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits