YRC Public Data Repository - Protein Structure Prediction

Protein:	TR120_MOUSE
Organism:	Mus musculus
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TR120_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|73953906 - gi\|73953906\|ref\|XP_853735.1\| PREDICTED: similar to Opsin-4 (Melanopsin) [Canis familiaris]	213.0	[0..5]	[294..97]
gi\|68370558 - gi\|68370558\|ref\|XP_692751.1\| PREDICTED: similar to Galanin receptor type 2 (GAL2-R) (GALR2) [Danio r...	212.0	[0..3]	[292..371]
gi\|21951818 - gi\|21951818\|gb\|AAM82355.1\|AF311307_1 somatostatin receptor type 3 [Carassius auratus]	207.0	[0..6]	[291..58]
OPN4_BRABE - Melanopsin OS=Branchiostoma belcheri GN=OPN4 PE=1 SV=1	200.0	[0..5]	[295..85]
gi\|11139618 - gi\|11139618\|gb\|AAG31764.1\|AF288368_1 thyrotropin-releasing hormone receptor 2 [Catostomus commersoni...	199.0	[0..5]	[294..31]
gi\|49169818, gi\|... - gi\|62635496\|gb\|AAX90617.1\| Sstr4 [Mus musculus], gi\|49169818\|ref\|NP_033245.2\| somatostatin receptor ...	199.0	[0..6]	[295..45]
gi\|50737619 - gi\|50737619\|ref\|XP_426087.1\| PREDICTED: similar to opioid receptor, kappa 1; Opiate receptor, kappa-...	199.0	[0..11]	[294..270]
OPSD_ALLMI - Rhodopsin OS=Alligator mississippiensis GN=RHO PE=2 SV=1	198.0	[0..3]	[292..35]

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Predicted Domain #1

Region A:
Residues: [1-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLVEWIVTI IMMTEFLLGN CANVFITIVN FIDCVKRRKI SSADRIITAI AIFRIGLLWA  60
   61 MLTNWHSHVF TPDTDNLQMR VFGGITWAIT NHFTTWLGTI LSMFYLFKIA NFSNSLFLHL 120
  121 KRKLDNVLLV IFLGSSLFLV AYLGMVNIKK IAWMSIHEGN VTTKSKLKHV TSITNMLLFS 180
  181 LINIVPFGIS LNCVLLLIYS LSKHLKNMKF YGKGCQDQST MVHIKALQTV VSFLLLYATY 240
  241 SSCVIISGWS LQNAPVFLFC VTIGSFYPAG HSCILIWGNQ KLKQVFLLLL RQMRC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.522879
Match:	1f88A
Description:	Rhodopsin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits