YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42476125, gi\|...
Organism:	Mus musculus
Length:	268 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42476125, gi|....

Description	E-value	Query Range	Subject Range
RPP30_MOUSE - Ribonuclease P protein subunit p30 OS=Mus musculus GN=Rpp30 PE=1 SV=1	309.0	[0..1]	[268..1]
gi\|73997973 - gi\|73997973\|ref\|XP_534959.2\| PREDICTED: similar to Ribonuclease P protein subunit p30 (RNaseP protei...	308.0	[0..1]	[268..1]
gi\|109463823, gi... - gi\|109463823\|ref\|XP_001080083.1\| PREDICTED: similar to Ribonuclease P protein subunit p30 (RNaseP pr...	306.0	[0..1]	[268..1]
gi\|109089903 - gi\|109089903\|ref\|XP_001087609.1\| PREDICTED: ribonuclease P (30kD) [Macaca mulatta]	306.0	[0..1]	[267..1]
RPP30 - ribonuclease P/MRP 30kDa subunit gi\|60656497, gi\|... - gi\|60656497\|gb\|AAX32812.1\| ribonuclease P/MRP 30kDa subunit [synthetic construct], gi\|123999957\|gb\|A...	305.0	[0..1]	[268..1]
gi\|60653449 - gi\|60653449\|gb\|AAX29419.1\| ribonuclease P/MRP 30kDa subunit [synthetic construct]	305.0	[0..1]	[268..1]
RPP30_BOVIN - Ribonuclease P protein subunit p30 OS=Bos taurus GN=RPP30 PE=2 SV=1	304.0	[0..1]	[267..1]
gi\|114631777 - gi\|114631777\|ref\|XP_521557.2\| PREDICTED: ribonuclease P (30kD) [Pan troglodytes]	304.0	[0..1]	[265..1]

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Predicted Domain #1

Region A:
Residues: [1-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAFADLDLR AGSDLKALRG LVETAAHLGY SVVAINHIVD FKEKKREIEK PITVSELFTT  60
   61 LPIVQGKSRP IKILTRLTII VTDPAHCNVL RATSSRVRLY DIVAVFPKTE KLFHVACTHL 120
  121 DVDLVCITVT EKLPFYFKRP PVNVAIERGL GFELVYGPAI RDATMRRYTI SNALNLMQIC 180
  181 KGKNVILSSA AERPLEIRGP YDVANLGLLF GLSENDGKAA VSTNCRAVFL HGETRKTAFG 240
  241 IISTVKKPRP SEADDESLPV CKKAKCEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.522879
Match:	1m65A
Description:	Hypothetical protein YcdX
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits