YRC Public Data Repository - Protein Structure Prediction

Protein:	POP5_MOUSE
Organism:	Mus musculus
Length:	169 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POP5_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|12850512 - gi\|12850512\|dbj\|BAB28751.1\| unnamed protein product [Mus musculus]	226.0	[0..3]	[169..2]
POP5_BOVIN - Ribonuclease P/MRP protein subunit POP5 OS=Bos taurus GN=POP5 PE=2 SV=1	218.0	[0..1]	[169..1]
gi\|109497347, gi... - gi\|27666062\|ref\|XP_213794.1\| PREDICTED: similar to processing of precursor 5, ribonuclease P/MRP fam...	211.0	[0..1]	[159..1]
gi\|73994750 - gi\|73994750\|ref\|XP_534710.2\| PREDICTED: similar to processing of precursor 5, ribonuclease P/MRP sub...	210.0	[0..1]	[169..1]
POP5 - processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae) gi\|109098960 - gi\|109098960\|ref\|XP_001089950.1\| PREDICTED: similar to processing of precursor 5, ribonuclease P/MRP... gi\|114647330 - gi\|114647330\|ref\|XP_509430.2\| PREDICTED: processing of precursor 5, ribonuclease P/MRP subunit isofo...	203.0	[0..1]	[148..1]
gi\|114647328 - gi\|114647328\|ref\|XP_001162438.1\| PREDICTED: processing of precursor 5, ribonuclease P/MRP subunit is...	188.0	[0..1]	[148..1]
gi\|157773877 - gi\|157773877\|ref\|XP_001665004.1\| hypothetical protein CBG13279 [Caenorhabditis briggsae AF16] gi\|187028843, gi... - gi\|39584812\|emb\|CAE67707.1\| Hypothetical protein CBG13279 [Caenorhabditis briggsae], gi\|187028843\|em...	159.0	[0..1]	[167..1]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRFKHRYLL CELVSEDARC RLSLDDRVLG GLVRDTIARV HGAFGAAACS VGFAVRYLNA  60
   61 YTGVVLLRCR KDFYQLVWSA LPFITYLENK GHRYPCFFNT LHVGGTIRTC QKFLIQYNRR 120
  121 QLLILLQNCT DEGEREAIKK SVSRSCLLDR EPVEELSDSA GEEVAEAME

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	2czvC
Description:	No description for 2czvC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits