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View Structure Prediction Details

Protein: CYAC3_MOUSE
Organism: Mus musculus
Length: 242 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYAC3_MOUSE.

Description E-value Query
Range
Subject
Range
gi|109492061 - gi|109492061|ref|XP_001081563.1| PREDICTED: similar to Cytochrome b561 (Cytochrome b-561) [Rattus no...
259.0 [0..7] [240..286]
gi|109105937 - gi|109105937|ref|XP_001082706.1| PREDICTED: similar to cytochrome b, ascorbate dependent 3 [Macaca m...
241.0 [0..1] [242..84]
gi|74193111 - gi|74193111|dbj|BAE20585.1| unnamed protein product [Mus musculus]
230.0 [0..1] [235..1]
gi|94717629, gi|... - gi|94717629|gb|ABF47090.1| cytochrome b reductase 1 [Homo sapiens], gi|40850900|gb|AAH65290.1| Cytoc...
228.0 [0..1] [232..3]
gi|114581695 - gi|114581695|ref|XP_001143044.1| PREDICTED: similar to Cytochrome b reductase 1 isoform 3 [Pan trogl...
227.0 [0..1] [232..3]

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Predicted Domain #1
Region A:
Residues: [1-242]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGWFYLSC MVLGSLGSMC ILFTAYWMQY WRGGFAWDGT VLMFNWHPVL MVAGMVVLYG  60
   61 AASLVYRLPS SWVGPRLPWK VLHAALHLLA FTCTVVGLIA VFRFHNHSRI AHLYSLHSWL 120
  121 GITTVVLFAC QWFLGFAVFL LPWASQWLRS LLKPLHVFFG ACILSLSITS VISGINEKLF 180
  181 FVLKNATKPY SSLPGEAVFA NSTGLLVVAF GLLVLYVLLA SSWKRPDPGA LTDRQPLLHD 240
  241 RE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.42
Match: 1kqfC
Description: Formate dehydrogenase N, cytochrome (gamma) subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ion transmembrane transporter activity 0.89088306929437 bayes_pls_golite062009
cation transmembrane transporter activity 0.890158298449879 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.814112055419571 bayes_pls_golite062009
substrate-specific transporter activity 0.812206012699042 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 0.773137851186839 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 0.762114046778875 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 0.679179334119734 bayes_pls_golite062009
transporter activity 0.629864849462794 bayes_pls_golite062009
transmembrane transporter activity 0.622501423809131 bayes_pls_golite062009
catalytic activity 0.349353660965659 bayes_pls_golite062009
ubiquinol-cytochrome-c reductase activity 0.143276144501499 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor 0.143276144501499 bayes_pls_golite062009
binding 0.0102629993652836 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle