YRC Public Data Repository - Protein Structure Prediction

Protein:	PTMA_MOUSE
Organism:	Mus musculus
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTMA_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|157757807 - gi\|157757807\|ref\|XP_001671247.1\| Hypothetical protein CBG01673 [Caenorhabditis briggsae AF16] gi\|187038031, gi... - gi\|39587583\|emb\|CAE58521.1\| Hypothetical protein CBG01673 [Caenorhabditis briggsae], gi\|187038031\|em...	93.0	[0..2]	[110..3702]
NCKX1_BOVIN - Sodium/potassium/calcium exchanger 1 OS=Bos taurus GN=SLC24A1 PE=1 SV=2	91.0	[0..6]	[86..739]
gi\|85084670 - gi\|85084670\|ref\|XP_957359.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28918449, gi\|... - gi\|32411685\|ref\|XP_326323.1\| hypothetical protein [Neurospora crassa], gi\|28918449\|gb\|EAA28123.1\| hy...	84.0	[0..3]	[110..4136]
SPCC737.08 - midasin MDN1_SCHPO - Midasin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mdn1 PE=1 SV=1	81.0	[0..1]	[110..4055]
gi\|82539404 - gi\|82539404\|ref\|XP_724092.1\| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi\|23478621 - gi\|23478621\|gb\|EAA15657.1\| TAP1 protein [Plasmodium yoelii yoelii]	80.0	[0..7]	[110..623]
gi\|110742309 - gi\|110742309\|dbj\|BAE99079.1\| hypothetical protein [Arabidopsis thaliana]	78.0	[0..8]	[102..57]
CE23293 - status:Partially_confirmed UniProt:Q9NAL5 protein_id:CAB76739.1	76.0	[0..8]	[111..161]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDAAVDTSS EITTKDLKEK KEVVEEAENG RDAPANGNAQ NEENGEQEAD NEVDEEEEEG  60
   61 GEEEEEEEEG DGEEEDGDED EEAEAPTGKR VAEDDEDDDV DTKKQKTEED D

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	68.236572
Match:	PF03247.5
Description:	No description for PF03247.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits