YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|91271, gi\|198...
Organism:	Mus musculus
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|91271, gi|198....

Description	E-value	Query Range	Subject Range
gi\|109478811 - gi\|109478811\|ref\|XP_234722.4\| PREDICTED: similar to ribosomal protein L19 [Rattus norvegicus]	294.0	[0..7]	[196..299]
gi\|42544915, gi\|... - gi\|46136717\|ref\|XP_390050.1\| hypothetical protein FG09874.1 [Gibberella zeae PH-1], gi\|42544915\|gb\|E...	286.0	[0..1]	[185..2677]
gi\|67539340, gi\|... - gi\|67539340\|ref\|XP_663444.1\| hypothetical protein AN5840.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	277.0	[0..1]	[185..2599]
gi\|115442904, gi... - gi\|115442904\|ref\|XP_001218259.1\| 60S ribosomal protein L19 [Aspergillus terreus NIH2624], gi\|1141881...	275.0	[0..1]	[185..2699]
gi\|38104335, gi\|... - gi\|39945398\|ref\|XP_362236.1\| hypothetical protein MG04681.4 [Magnaporthe grisea 70-15], gb\|EAA50922....	267.0	[0..2]	[185..962]
gi\|94420417 - gi\|94420417\|ref\|XP_001006025.1\| PREDICTED: similar to ribosomal protein L19 [Mus musculus]	256.0	[0..1]	[196..1]
gi\|109048759 - gi\|109048759\|ref\|XP_001108221.1\| PREDICTED: similar to ribosomal protein L19 [Macaca mulatta]	253.0	[0..1]	[196..11]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMLRLQKRL ASSVLRCGKK KVWLDPNETN EIANANSRQQ IRKLIKDGLI IRKPVTVHSR  60
   61 ARCRKNTLAR RKGRHMGIGK RKGTANARMP EKVTWMRRMR ILRRLLRRYR ESKKIDRHMY 120
  121 HSLYLKVKGN VFKNKRILME HIHKLKADKA RKKLLADQAE ARRSKTKEAR KRREERLQSK 180
  181 KEEIIKTLSK EEETKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.522879
Match:	1s1iP
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits