YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1655637, gi\|6...
Organism:	Mus musculus
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1655637, gi|6....

Description	E-value	Query Range	Subject Range
CFA20_CHICK - Cilia- and flagella-associated protein 20 OS=Gallus gallus GN=CFAP20 PE=2 SV=1	339.0	[0..1]	[193..1]
CFA20_MOUSE - Cilia- and flagella-associated protein 20 OS=Mus musculus GN=Cfap20 PE=1 SV=1 tr\|M3WMG3\|M3WMG3... - Cilia and flagella associated protein 20 OS=Felis catus GN=CFAP20 PE=4 SV=1 gi\|149032393 - gi\|149032393\|gb\|EDL87284.1\| rCG39041, isoform CRA_a [Rattus norvegicus] CFA20_BOVIN - Cilia- and flagella-associated protein 20 OS=Bos taurus GN=CFAP20 PE=2 SV=1 gi\|149699186 - gi\|149699186\|ref\|XP_001494857.1\| PREDICTED: similar to UPF0468 protein C16orf80 homolog (Gene trap l... gi\|73950333 - gi\|73950333\|ref\|XP_544382.2\| PREDICTED: similar to transcription factor IIB [Canis familiaris] tr\|G1T6K5\|G1T6K5... - Uncharacterized protein OS=Oryctolagus cuniculus GN=CFAP20 PE=4 SV=2	338.0	[0..1]	[193..1]
tr\|A0A0R4IVH3\|A0... - Isoform of Q6PBJ2, Cilia- and flagella-associated protein 20 OS=Danio rerio GN=cfap20 PE=1 SV=1 CFA20_XENTR - Cilia- and flagella-associated protein 20 OS=Xenopus tropicalis GN=cfap20 PE=2 SV=1 CFA20_XENLA - Cilia- and flagella-associated protein 20 OS=Xenopus laevis GN=cfap20 PE=2 SV=1	338.0	[0..1]	[193..1]
gi\|167773773, gi... - gi\|208966016\|dbj\|BAG73022.1\| chromosome 16 open reading frame 80 [synthetic construct], gi\|167773773... CCDS10793.1_1 - null gi\|55643953 - gi\|55643953\|ref\|XP_511001.1\| PREDICTED: transcription factor IIB isoform 2 [Pan troglodytes] C16orf80 - chromosome 16 open reading frame 80 gi\|109128715 - gi\|109128715\|ref\|XP_001101318.1\| PREDICTED: similar to transcription factor IIB [Macaca mulatta] ENSCJAT00000022706 - null	337.0	[0..1]	[193..1]
CFA20_DANRE - Cilia- and flagella-associated protein 20 OS=Danio rerio GN=cfap20 PE=2 SV=1	336.0	[0..1]	[192..1]
gi\|157868838 - gi\|157868838\|ref\|XP_001682971.1\| hypothetical protein [Leishmania major strain Friedlin] gi\|68223854, gi\|... - gi\|68223854\|emb\|CAJ03927.1\| hypothetical protein, conserved [Leishmania major], emb\|CAC14539.1\| prob...	334.0	[0..1]	[187..1]
gi\|48104652 - gi\|48104652\|ref\|XP_395824.1\| PREDICTED: similar to transcription factor IIB [Apis mellifera]	333.0	[0..1]	[192..1]
gi\|91077004 - gi\|91077004\|ref\|XP_975505.1\| PREDICTED: similar to transcription factor IIB, putative [Tribolium cas...	331.0	[0..1]	[192..1]
gi\|71746836 - gi\|71746836\|ref\|XP_822473.1\| hypothetical protein [Trypanosoma brucei TREU927] gi\|70832141 - gi\|70832141\|gb\|EAN77645.1\| hypothetical protein, conserved [Trypanosoma brucei]	330.0	[0..1]	[187..1]
AGAP009680-PA - \|protein_coding\|3R:38394804:38396210:1\|gene:AGAP009680 gi\|108870394, gi... - gi\|157134658\|ref\|XP_001663334.1\| transcription factor IIB, putative [Aedes aegypti], gi\|108870394\|gb... gi\|158298556, gi... - gi\|158298556\|ref\|XP_318737.3\| AGAP009680-PA [Anopheles gambiae str. PEST], gi\|157013940\|gb\|EAA14543....	330.0	[0..1]	[189..1]

Back

Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKNTFQSGF LSILYSIGSK PLQIWDKKVR NGHIKRITDN DIQSLVLEIE GTNVSTTYIT  60
   61 CPADPKKTLG IILPFLVMII KNLKKYFTFE VQVLDDKNVR RRFRASNYQS TTRVKPFICT 120
  121 MPMRLDDGWN QIQFNLSDFT RRAYGTNYIE TLRVQIHANC RIRRVYFSDR LYSEDELPAE 180
  181 FKLYLPVQNK AKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	173.259637
Match:	PF05018.4
Description:	No description for PF05018.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits