YRC Public Data Repository - Protein Structure Prediction

Protein:	TRAT1_MOUSE
Organism:	Mus musculus
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRAT1_MOUSE.

Description	E-value	Query Range	Subject Range
TRAT1 - T cell receptor associated transmembrane adaptor 1 gi\|123982476, gi... - gi\|123997143\|gb\|ABM86173.1\| T cell receptor associated transmembrane adaptor 1 [synthetic construct]...	365.0	[0..1]	[186..1]
gi\|114588373 - gi\|114588373\|ref\|XP_001152059.1\| PREDICTED: T-cell receptor interacting molecule isoform 2 [Pan trog...	363.0	[0..1]	[186..1]
gi\|74218249, gi\|... - gi\|83582421\|gb\|AAI04352.2\| T cell receptor associated transmembrane adaptor 1 [Mus musculus], gi\|797...	359.0	[0..1]	[187..11]
gi\|109032942 - gi\|109032942\|ref\|XP_001101777.1\| PREDICTED: similar to T-cell receptor interacting molecule [Macaca ...	351.0	[0..1]	[186..1]
gi\|83816943, gi\|... - gi\|83816943\|ref\|NP_001033070.1\| T cell receptor associated transmembrane adaptor 1 [Rattus norvegicu...	329.0	[0..1]	[187..1]
gi\|57109514 - gi\|57109514\|ref\|XP_535733.1\| PREDICTED: similar to T-cell receptor interacting molecule [Canis famil...	308.0	[0..1]	[186..1]
gi\|76672700 - gi\|76672700\|ref\|XP_871693.1\| PREDICTED: similar to T-cell receptor interacting molecule [Bos taurus]	291.0	[0..3]	[186..41]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSSGCPFF LWGLLAFLGL ALVISLIFNI SHYVEKQRRD EIYRYSDDYI PRVDEYYVED  60
   61 APIYGNLENI IPEPLDENCY EQMKGRPQRS ASDPQEVAAP AQVPAEAQMC YASLDHSVKG 120
  121 KRRRPRKQNT NVSDRGKDTQ VYTMDANVSQ INMVESFPPD NQVVEESIHD DPARLFGLIR 180
  181 AKREPVI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits