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View Structure Prediction Details

Protein: RL7A_MOUSE
Organism: Mus musculus
Length: 266 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL7A_MOUSE.

Description E-value Query
Range
Subject
Range
gi|114627384 - gi|114627384|ref|XP_001153928.1| PREDICTED: similar to L7a protein [Pan troglodytes]
441.0 [0..16] [266..128]
gi|94387458 - gi|94387458|ref|XP_992549.1| PREDICTED: similar to 60S ribosomal protein L7a (Surfeit locus protein ...
440.0 [0..2] [266..19]
gi|109050631 - gi|109050631|ref|XP_001082189.1| PREDICTED: similar to 60S ribosomal protein L7a [Macaca mulatta]
424.0 [0..1] [266..1]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKGKKAKGK KVAPAPAVVK KQEAKKVVNP LFEKRPKNFG IGQDIQPKRD LTRFVKWPRY  60
   61 IRLQRQRAIL YKRLKVPPAI NQFTQALDRQ TATQLLKLAH KYR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [104-266]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PETKQEKKQR LLARAEKKAA GKGDVPTKRP PVLRAGVNTV TTLVENKKAQ LVVIAHDVDP  60
   61 IELVVFLPAL CRKMGVPYCI IKGKARLGHL VHRKTCTTVA FTQVNSEDKG ALAKLVEAIR 120
  121 TNYNDRYDEI RRHWGGNVLG PKSVARIAKL EKAKAKELAT KLG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.09691
Match: 1s1iG
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle