YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|26341776, gi\|...
Organism:	Mus musculus
Length:	291 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|26341776, gi|....

Description	E-value	Query Range	Subject Range
RT02_MOUSE - 28S ribosomal protein S2, mitochondrial OS=Mus musculus GN=Mrps2 PE=1 SV=1	322.0	[0..1]	[291..1]
gi\|109467959, gi... - ref\|XP_342399.1\| similar to mitochondrial ribosomal protein S2 [Rattus norvegicus], gi\|109467959\|ref...	313.0	[0..1]	[291..1]
gi\|114627489 - gi\|114627489\|ref\|XP_520354.2\| PREDICTED: mitochondrial ribosomal protein S2 isoform 3 [Pan troglodyt...	287.0	[0..1]	[290..1]
MRPS2 - mitochondrial ribosomal protein S2	286.0	[0..1]	[290..1]
gi\|67156412 - gi\|67156412\|ref\|ZP_00418005.1\| Ribosomal protein S2, bacterial and organelle form [Azotobacter vinel... gi\|67156412, gi\|... - gi\|67156412\|ref\|ZP_00418005.1\| Ribosomal protein S2, bacterial and organelle form [Azotobacter vinel...	282.0	[0..1]	[260..320]
gi\|109109795 - gi\|109109795\|ref\|XP_001097716.1\| PREDICTED: mitochondrial ribosomal protein S2 isoform 2 [Macaca mul...	277.0	[0..1]	[280..1]
gi\|116629458, gi... - gi\|116629458\|ref\|YP_814630.1\| 30S ribosomal protein S2 [Lactobacillus gasseri ATCC 33323], gi\|116095...	269.0	[0..72]	[287..10]
gi\|53688528 - gi\|53688528\|ref\|ZP_00110656.2\| COG0052: Ribosomal protein S2 [Nostoc punctiforme PCC 73102]	267.0	[0..60]	[289..42]

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Predicted Domain #1

Region A:
Residues: [1-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAPAVLTR LLCAGVRRWP GFLQKAIPGP AEQNGRKVTG APVPAVSEPQ DGDDFQSRIL  60
   61 DKPLQHSDFF NVKELFSVKS LFEARVHLGH KAGCRHRFME PYIFGNRLGQ DIIDLDQTAL 120
  121 NLQLALNFTA HVAYRKGIIL FVSRNRQFSH LIETTAQACG EYAHTRYFKG GLLTNAQLLF 180
  181 GPSVRLPDLI IFLHTLNNVF EPHVAVRDAA KMNIPTVGIV DTNCNPCLIT YPIPGNDDSP 240
  241 QAIQLFCKLF RTTINRAKEK RRQMEALHRL QSPKGSEGSG TSPVPDKSHS P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.154902
Match:	1vs5B
Description:	No description for 1vs5B was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.68569821712377	bayes_pls_golite062009
structural molecule activity	9.23086340425923	bayes_pls_golite062009
RNA binding	0.825542354503353	bayes_pls_golite062009
binding	0.775544224160057	bayes_pls_golite062009
nucleic acid binding	0.588158477256084	bayes_pls_golite062009
protein binding	0.156148644279823	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: