YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15928669, gi\|...
Organism:	Mus musculus
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15928669, gi|....

Description	E-value	Query Range	Subject Range
CPLX2_NARJA - Complexin-2 OS=Narke japonica PE=1 SV=1	143.0	[0..1]	[134..1]
gi\|55926107, gi\|... - gi\|55926107\|ref\|NP_001007496.1\| cplx2 protein [Xenopus (Silurana) tropicalis], gi\|51258162\|gb\|AAH799...	142.0	[0..1]	[134..1]
gi\|363738978\|ref... - PREDICTED: complexin-2-like [Gallus gallus] CPLX2 - complexin 2 tr\|M3WND1\|M3WND1... - Complexin 2 OS=Felis catus GN=CPLX2 PE=4 SV=1 gi\|109079818 - gi\|109079818\|ref\|XP_001083046.1\| PREDICTED: complexin 2 [Macaca mulatta] gi\|73954019 - gi\|73954019\|ref\|XP_546223.2\| PREDICTED: similar to complexin 2 [Canis familiaris] gi\|197128165 - gi\|197128165\|gb\|ACH44663.1\| putative complexin 2 variant [Taeniopygia guttata] CPLX2_MOUSE - Complexin-2 OS=Mus musculus GN=Cplx2 PE=1 SV=1 CPLX2_RAT - Complexin-2 OS=Rattus norvegicus GN=Cplx2 PE=1 SV=1 CPLX2_BOVIN - Complexin-2 OS=Bos taurus GN=CPLX2 PE=1 SV=1 gi\|126290948 - gi\|126290948\|ref\|XP_001370865.1\| PREDICTED: hypothetical protein [Monodelphis domestica] gi\|149726060 - gi\|149726060\|ref\|XP_001502792.1\| PREDICTED: similar to Complexin-2 (Complexin II) (CPX II) (Synaphin... gi\|182888019 - gi\|182888019\|gb\|AAI60304.1\| Complexin 2 [synthetic construct]	142.0	[0..1]	[134..1]
gi\|37590711, gi\|... - gi\|37590711\|gb\|AAH59299.1\| MGC68923 protein [Xenopus laevis], gi\|162139014\|ref\|NP_001080000.1\| hypot...	139.0	[0..1]	[134..1]
CPLX1_RAT - Complexin-1 OS=Rattus norvegicus GN=Cplx1 PE=1 SV=1 CPLX1_MOUSE - Complexin-1 OS=Mus musculus GN=Cplx1 PE=1 SV=1	138.0	[0..1]	[134..1]
gi\|50761882 - gi\|50761882\|ref\|XP_424869.1\| PREDICTED: similar to synaphin 2 [Gallus gallus]	138.0	[0..1]	[134..1]
gi\|30584359, gi\|... - gi\|61372290\|gb\|AAX43818.1\| complexin 1 [synthetic construct], gi\|61372285\|gb\|AAX43817.1\| complexin 1...	136.0	[0..1]	[134..1]
gi\|189527775, gi... - gi\|68373364\|ref\|XP_683429.1\| PREDICTED: similar to complexin 2 isoform 1 [Danio rerio], gi\|189527775...	135.0	[0..1]	[134..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFVMKQALG GATKDMGKML GGDEEKDPDA AKKEEERQEA LRQAEEERKA KYAKMEAERE  60
   61 VMRQGIRDKY GIKKKEEREA EAQVAMEANS EGSLTRPKKA IPPGCGDEPE EEDESILDTV 120
  121 IKYLPGPLQD MFKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	89.508638
Match:	PF05835.3
Description:	No description for PF05835.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.438	N/A	N/A	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.380	N/A	N/A	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.344	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.342	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.341	N/A	N/A	d.96.1	Tetrahydrobiopterin biosynthesis enzymes-like
View	Download	0.311	N/A	N/A	c.51.1	Anticodon-binding domain of Class II aaRS
View	Download	0.306	N/A	N/A	c.51.1	Anticodon-binding domain of Class II aaRS
View	Download	0.297	N/A	N/A	a.25.1	Ferritin-like
View	Download	0.292	N/A	N/A	a.25.1	Ferritin-like
View	Download	0.271	N/A	N/A	a.7.1	Spectrin repeat

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits