YRC Public Data Repository - Protein Structure Prediction

Protein:	TYW3_MOUSE
Organism:	Mus musculus
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TYW3_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|26326339, gi\|... - gi\|26326339\|dbj\|BAC26913.1\| unnamed protein product [Mus musculus], gi\|148679943\|gb\|EDL11890.1\| tRNA...	364.0	[0..1]	[257..24]
gi\|109008486 - gi\|109008486\|ref\|XP_001100269.1\| PREDICTED: hypothetical protein [Macaca mulatta]	326.0	[0..1]	[253..1]
TYW3_PONPY - tRNA wybutosine-synthesizing protein 3 homolog - Pongo pygmaeus (Orangutan) TYW3_PONAB - tRNA wybutosine-synthesizing protein 3 homolog OS=Pongo abelii GN=TYW3 PE=2 SV=1	318.0	[0..1]	[256..1]
TYW3 - tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	317.0	[0..1]	[234..1]
gi\|114557204 - gi\|114557204\|ref\|XP_001167649.1\| PREDICTED: tRNA-yW synthesizing protein 3 homolog isoform 2 [Pan tr...	315.0	[0..1]	[234..1]
TYW3_BOVIN - tRNA wybutosine-synthesizing protein 3 homolog OS=Bos taurus GN=TYW3 PE=2 SV=1	289.0	[0..1]	[256..1]
TYW3_PIG - tRNA wybutosine-synthesizing protein 3 homolog OS=Sus scrofa GN=TYW3 PE=2 SV=1	284.0	[0..1]	[256..1]
gi\|67903418, gi\|... - gi\|67903418\|ref\|XP_681965.1\| hypothetical protein AN8696.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	266.0	[0..7]	[251..6]

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Predicted Domain #1

Region A:
Residues: [1-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRSAEFGRW KAQSLSKADL SRKGSVDEDA VEVVELLNSR EEFFTTSSCA GRILLLDGST  60
   61 EGSGVQKQHC CWLLVTHKPC ARDDVMAALK GATSEAVLKF EPFILHVQCR TLQDAQTLHS 120
  121 VAIDSGFRNS GITVGKRGKT MLAVRGTHGL EVPLTHKGKL MVTEEYIEFL LTIANQKMEE 180
  181 NKRRIGRFYN YLQHALKRET ISNSHSKIKE RNNPLCTHKN RRSQGKAQGP STTEDNGREL 240
  241 EDGDGLEISA ALFLGDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.0
Match:	2drvA
Description:	No description for 2drvA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits