YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|148671844, gi...
Organism:	Mus musculus
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|148671844, gi....

Description	E-value	Query Range	Subject Range
KCNE2_RAT - Potassium voltage-gated channel subfamily E member 2 OS=Rattus norvegicus GN=Kcne2 PE=1 SV=1 KCNE2_CAVPO - Potassium voltage-gated channel subfamily E member 2 OS=Cavia porcellus GN=Kcne2 PE=2 SV=1	214.0	[0..1]	[123..1]
KCNE2_MOUSE - Potassium voltage-gated channel subfamily E member 2 OS=Mus musculus GN=Kcne2 PE=2 SV=2	213.0	[0..1]	[123..1]
gi\|60831478 - gi\|60831478\|gb\|AAX36972.1\| potassium voltage-gated channel Isk-related family member 2 [synthetic co...	210.0	[0..1]	[123..1]
gi\|114683984, gi... - gi\|114683984\|ref\|XP_001167300.1\| PREDICTED: similar to minK-related peptide 1; MiRP1 isoform 2 [Pan ...	209.0	[0..1]	[123..1]
KCNE2 - potassium voltage-gated channel, Isk-related family, member 2	209.0	[0..1]	[123..1]
gi\|109065428, gi... - gi\|109065430\|ref\|XP_001089749.1\| PREDICTED: similar to potassium voltage-gated channel, Isk-related ...	209.0	[0..1]	[123..1]
gi\|74001416 - gi\|74001416\|ref\|XP_544867.2\| PREDICTED: similar to potassium voltage-gated channel, Isk-related fami...	206.0	[0..1]	[123..1]
gi\|84201667, gi\|... - gi\|84201667\|gb\|AAI11663.1\| Potassium voltage-gated channel, Isk-related family, member 2 [Bos taurus...	194.0	[0..1]	[123..1]
gi\|50730043 - gi\|50730043\|ref\|XP_425549.1\| PREDICTED: similar to potassium voltage-gated channel, Isk-related fami...	157.0	[0..1]	[107..1]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLANLTQT LEDAFKKIFI TYMDSWRRNT TAEEQALQAR VDAENFYYVI LYLMVMIGMF  60
   61 SFIVVAILVS TVKSKRREHS QDPYHQYIVE DWQEKYKSQI LHLEDSKATI HENMGATGFT 120
  121 VSP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.815	0.024	potassium ion binding	a.74.1	Cyclin-like
View	Download	0.866	0.024	potassium ion binding	a.24.17	Group V grass pollen allergen
View	Download	0.794	0.024	potassium ion binding	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.784	0.024	potassium ion binding	a.46.1	Methionine synthase domain
View	Download	0.792	0.024	potassium ion binding	a.24.17	Group V grass pollen allergen

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits