YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12832459, gi\|...
Organism:	Mus musculus
Length:	169 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12832459, gi|....

Description	E-value	Query Range	Subject Range
gi\|2137070 - gi\|2137070\|pir\|\|I48085 integral membrane protein CII-3 - Chinese hamster (fragment)	195.0	[0..1]	[167..5]
gi\|57111445 - gi\|57111445\|ref\|XP_536140.1\| PREDICTED: similar to succinate dehydrogenase complex, subunit C precur...	192.0	[0..1]	[169..1]
C560_BOVIN - Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Bos taurus GN=SDHC PE=1 SV=2	189.0	[0..1]	[169..1]
gi\|53850596, gi\|... - gi\|53850596\|ref\|NP_001005534.1\| succinate dehydrogenase complex, subunit C [Rattus norvegicus], gi\|5...	186.0	[0..1]	[169..1]
gi\|109086211, gi... - gi\|109086211\|ref\|XP_001093733.1\| PREDICTED: similar to succinate dehydrogenase complex, subunit C is...	185.0	[0..1]	[169..1]
SDHC - succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa	184.0	[0..1]	[169..1]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAFLLRHVS RHCLRAHLNA QRCIRNAAPL GTTAKEEMER FWKKNTSSNR PLSPHLTIYK  60
   61 WSLPMALSVC HRGSGIALSG GVSLFGLSAL LLPGNFESYL MFVKSLCLGP TLIYSAKFVL 120
  121 VFPLMYHSLN GIRHLLWDLG KGLAIPQVWL SGVAVVVLAV LSSGGLAAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.045757
Match:	1zoyC
Description:	Crystal Structure of Mitochondrial Respiratory Complex II from porcine heart at 2.4 Angstroms
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits