YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|26369247, gi\|...
Organism:	Mus musculus
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|26369247, gi|....

Description	E-value	Query Range	Subject Range
gi\|56541264 - gi\|56541264\|gb\|AAH86922.1\| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 [Mus musculus]	217.0	[0..1]	[149..1]
NDUAC_BOVIN - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Bos taurus GN=NDUFA12 PE=1 SV=1 gi\|222092839, gi... - gi\|223633908\|ref\|NP_001138660.1\| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 [Ovis aries]...	215.0	[0..5]	[149..1]
gi\|57096775 - gi\|57096775\|ref\|XP_532652.1\| PREDICTED: similar to 13kDa differentiation-associated protein [Canis f...	214.0	[0..5]	[149..1]
gi\|109481873, gi... - gi\|164565371\|ref\|NP_001100251.2\| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 [Rattus norv...	212.0	[0..5]	[149..1]
gi\|30585307, gi\|... - gi\|60653625\|gb\|AAX29506.1\| 13kDa differentiation-associated protein [synthetic construct], gi\|606536...	212.0	[0..5]	[149..1]
NDUFA12 - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 NDUAC_PANTR - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pan troglodytes GN=NDUFA12 PE=2 SV=...	212.0	[0..5]	[149..1]
gi\|111662467 - gi\|111662467\|gb\|ABH12257.1\| mitochondrial complex I subunit DAP13 [Gorilla gorilla] NDUAC_GORGO - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Gorilla gorilla gorilla GN=NDUFA12 ...	211.0	[0..5]	[149..1]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQMRMELVEV LKRGVQQVTG HGGLRGLLRV FFRANDIRIG TLVGEDKYGN KYYEDNKQFF  60
   61 GRHRWVIYTT EMNGKNTFWD VDGSMVPPEW HRWLHCMTDD PPTTNPPTAR KFIWTNHKFN 120
  121 VSATPEQYVP YSTTRKKIHE WVPPSTPYK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	66.585027
Match:	PF05071.7
Description:	No description for PF05071.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.266	N/A	N/A	d.93.1	SH2 domain
View	Download	0.207	N/A	N/A	a.118.15	Aconitase B, N-terminal domain
View	Download	0.203	N/A	N/A	a.118.15	Aconitase B, N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits