YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12851595, gi\|...
Organism:	Mus musculus
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12851595, gi|....

Description	E-value	Query Range	Subject Range
MED31_MOUSE - Mediator of RNA polymerase II transcription subunit 31 OS=Mus musculus GN=Med31 PE=1 SV=2	193.0	[0..1]	[131..1]
ENSMMUG000000037... - null, null MED31 - mediator complex subunit 31 ENSPTRT00000015946 - null ENSCJAT00000021710 - null	191.0	[0..1]	[131..1]
MED31_BOVIN - Mediator of RNA polymerase II transcription subunit 31 OS=Bos taurus GN=MED31 PE=2 SV=1	188.0	[0..1]	[131..1]
gi\|114666039 - gi\|114666039\|ref\|XP_523838.2\| PREDICTED: similar to CGI-125 protein [Pan troglodytes] gi\|109112964 - gi\|109112964\|ref\|XP_001103338.1\| PREDICTED: similar to Mediator of RNA polymerase II transcription s...	179.0	[0..7]	[131..1]
gi\|109491232, gi... - gi\|109491232\|ref\|XP_001080168.1\| PREDICTED: similar to Mediator of RNA polymerase II transcription s...	179.0	[0..7]	[131..1]
gi\|48122204 - gi\|48122204\|ref\|XP_393244.1\| PREDICTED: similar to Mediator of RNA polymerase II transcription subun...	177.0	[0..7]	[127..25]
gi\|72040230, gi\|... - gi\|72040230\|ref\|XP_794567.1\| PREDICTED: similar to CGI-125 protein [Strongylocentrotus purpuratus], ...	176.0	[0..7]	[121..17]
gi\|220944342, gi... - gi\|220954132\|gb\|ACL89609.1\| MED31-PA [synthetic construct], gi\|220944342\|gb\|ACL84714.1\| MED31-PA [sy... FBpp0293855, MED... - The gene Mediator complex subunit 31 is referred to in FlyBase by the symbol Dmel\MED31 (CG1057, FBg...	176.0	[0..6]	[115..11]
gi\|115483476, gi... - gi\|78709017\|gb\|ABB47992.1\| mediator complex subunit SOH1, putative, expressed [Oryza sativa (japonic...	173.0	[0..3]	[114..5]
mdt-31 - Yeast SOH1 protein like status:Confirmed UniProt:P91869 protein_id:CAB04242.1	173.0	[0..12]	[124..5]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAVAMETD DAGNRLRFQL ELEFVQCLAN PNYLNFLAQR GYFKDKAFVN YLKYLLYWKE  60
   61 PEYAKYLKYP QCLHMLELLQ YEHFREELVN AQCAKFIDEQ QILHWQHYSR KRVRLQQALA 120
  121 EQQQQNNTAG K

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	73.537602
Match:	PF05669.3
Description:	No description for PF05669.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.519	N/A	N/A	d.189.1	PX domain
View	Download	0.451	N/A	N/A	a.141.1	Frizzled cystein-rich domain
View	Download	0.422	N/A	N/A	a.118.9	ENTH/VHS domain
View	Download	0.420	N/A	N/A	a.141.1	Frizzled cystein-rich domain
View	Download	0.406	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.382	N/A	N/A	a.29.8	Description not found.
View	Download	0.380	N/A	N/A	a.29.12	Description not found.
View	Download	0.362	N/A	N/A	d.189.1	PX domain
View	Download	0.345	N/A	N/A	a.92.1	Carbamoyl phosphate synthetase, large subunit connection domain
View	Download	0.325	N/A	N/A	a.11.2	Second domain of FERM

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits