YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12844128, gi\|...
Organism:	Mus musculus
Length:	256 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12844128, gi|....

Description	E-value	Query Range	Subject Range
CC90B_MOUSE - Coiled-coil domain-containing protein 90B, mitochondrial OS=Mus musculus GN=Ccdc90b PE=1 SV=1	268.0	[0..1]	[256..1]
CC90B_RAT - Coiled-coil domain-containing protein 90B, mitochondrial OS=Rattus norvegicus GN=Ccdc90b PE=2 SV=1	254.0	[0..1]	[256..1]
gi\|114639579 - gi\|114639579\|ref\|XP_001175206.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	250.0	[0..1]	[254..1]
CCDC90B - coiled-coil domain containing 90B	250.0	[0..1]	[254..1]
gi\|109108128 - gi\|109108128\|ref\|XP_001098899.1\| PREDICTED: hypothetical protein [Macaca mulatta]	249.0	[0..1]	[254..1]

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Predicted Domain #1

Region A:
Residues: [1-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSRWIWRFL RPDGCGIRWT STPHGRLSPA LRRGFLTTTT KSDYDRRPVD ITPLEQRKLT  60
   61 FDTHALVQDL ETHGFDKTQA QTIVSVLSTL SNVSLDTIYK EMVTKAQQEI TVQQLMAHLD 120
  121 SIRKDMVILE KSEFANLRAE NEKMKIELDQ VKQQLTNETS RIRADNKLDI NLERSRVTDM 180
  181 FTDQEKQLIE ATNEFAKKDT QTKSIISETS NKIDTEIASL KTLMESSKLE TIRYLAASVF 240
  241 TCLAIALGFY RFWKEN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.30103
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits