| Protein: | Dg-PB |
| Organism: | Drosophila melanogaster |
| Length: | 914 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dg-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
587.0 | [0..188] | [906..116] |
|
Region A: Residues: [1-190] |
1 11 21 31 41 51
| | | | | |
1 MRFQWFLSAS ASLSLFLLLD FVVWIHGERD FNVNDSQVPV IEPKDVPAYK QDPYVTELMS 60
61 CQNTPSEIVL SLLLKKHDWS ELTATKRAHV QAKLAKFFAI PKEFISLDSV SKRELRSMHK 120
121 LAMRKGGKGN KNIETLNRRL GRASFMIGCG PSYFVMGEPI AKQIAHQMKD GTIGALTEEN 180
181 FGLWFIWRKE
|
| Detection Method: |  |
| Confidence: | 3.25 |
| Match: | 1u2cA |
| Description: | Crystal Structure of a-dystroglycan |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.53401809235127 | bayes_pls_golite062009 |
| protein binding | 0.963310152550711 | bayes_pls_golite062009 |
| cell adhesion molecule binding | 0.871842993993459 | bayes_pls_golite062009 |
| transporter activity | 0.863724831300677 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.688682339597643 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.491786688714933 | bayes_pls_golite062009 |
| receptor activity | 0.427379376489256 | bayes_pls_golite062009 |
| signal transducer activity | 0.352492495963483 | bayes_pls_golite062009 |
| molecular transducer activity | 0.352492495963483 | bayes_pls_golite062009 |
|
Region A: Residues: [191-749] |
1 11 21 31 41 51
| | | | | |
1 LKSRSNRKRR QSEGSGADED DYDYGDDDEE VAEPSTEVPP VTTHAHRHHH GAEGGEPDAI 60
61 SSGNNSLANN ELSTPATPTS SVATTTASTP ESSSISSNFV STDYMEPQPE ENSPPIIKTR 120
121 LQKLAVTSGK AFTFHVLPET FYDAEDQGNL RLALTDKDGH ELKANSWLQF NADKRELYGL 180
181 PLDDTVSRWQ YRLSATDSGN ASVTETVEIS VQQHRAVRTI NHEISVFVRI NEKPGHNIDW 240
241 QLKLINAVAR TLDDSTNSAV VVREIRQTPH DPHSATFVYF NETLPTSECP EKELKDIIAR 300
301 LDANRLSDLV QPQLGIKSIT GQLIGSCQKD LTQVKPTQHM TKNVPPMPRN QVDRVNASLG 360
361 QLLVYKVPAD TFYDANDNQL TLTLKTRDHL ELSPRHWLQF DSKNEEFYGI PKSGDIGSEE 420
421 YLLVAEDSGG LSAHDALVVV VSPAPKRDFG FFFKAYLSIK HERFNADLQR KFVERVAKLN 480
481 GDPTTGQIQI RSITTHHDSD GTIVNFYNTT LYRKHNSCRE KEVAMTRSVY LNSDLSLREA 540
541 AKRALGPELN LTNFSVVPF
|
| Detection Method: | |
| Confidence: | 74.0 |
| Match: | 1q55A |
| Description: | W-shaped trans interactions of cadherins model based on fitting C-cadherin (1L3W) to 3D map of desmosomes obtained by electron tomography |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [750-914] |
1 11 21 31 41 51
| | | | | |
1 SICHHTENID TNQLDYIPSR PEEPTHKSSF GEDYMITFVW PIVIIVAMLV AASIIACCLH 60
61 WCRQRSGKME LGDEEERKSF RAKGIPVIFQ DEYEEKPEIG NKSPVILKDE KPPLLPPSYN 120
121 TSNMNGDNDV DDYVPPPSVV VGGREVRGKS PATPSYRKPP PYVSP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
