YRC Public Data Repository - Protein Structure Prediction

Protein:	CG9500-PA
Organism:	Drosophila melanogaster
Length:	272 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG9500-PA.

Description	E-value	Query Range	Subject Range
gi\|212748 - gi\|212748\|gb\|AAA49085.1\| 190 kd tenascin precursor	331.0	[0..1]	[270..1259]
gi\|114568082 - gi\|114568082\|ref\|XP_524977.2\| PREDICTED: tenascin R (restrictin, janusin) [Pan troglodytes]	330.0	[0..7]	[270..1089]
gi\|73960558 - gi\|73960558\|ref\|XP_861119.1\| PREDICTED: similar to tenascin R (restrictin, janusin) isoform 2 [Canis...	330.0	[0..7]	[270..1095]
gi\|1617316 - gi\|1617316\|emb\|CAA66709.1\| tenascin-R [Homo sapiens]	329.0	[0..7]	[270..1089]

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Predicted Domain #1

Region A:
Residues: [1-272]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSESFQNDT AIRNKPELKS LYKLVLALLE ENQSNASTEN IQKSSSDLNT TGLSGRYPSQ  60
   61 CPTYPPAHGI YTVQVLGLKP FQVSCDAEIA GTGWTVMARR TSNKLNFFRS WAEYKNGFGQ 120
  121 LDGDFFIGLD KLHAITKSQP HELYIHLEDF EGQTRYAHYD EIFIESENKF YAMTKLGEFT 180
  181 GDAGDSMIHN RNQNFSTFDR DNDGWHKNCA EEYVGAWWHL NCTYSNLFGI YVKGDEGQYF 240
  241 QWKGIVWHSW RTESYSYKVM QMMVRPKCHC SG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.30103
Match:	2d39A
Description:	No description for 2d39A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits