YRC Public Data Repository - Protein Structure Prediction

Protein:	IFT25_MOUSE
Organism:	Mus musculus
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IFT25_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|149035757, gi... - gi\|196114870\|ref\|NP_001124474.1\| heat shock protein family B (small), member 11 [Rattus norvegicus],...	284.0	[0..1]	[143..1]
PP25_MOUSE, HSB1... - Placental protein 25 homolog - Mus musculus (Mouse), Heat shock protein beta-11 OS=Mus musculus GN=H...	284.0	[0..1]	[143..1]
gi\|109004905 - gi\|109004905\|ref\|XP_001113060.1\| PREDICTED: chromosome 1 open reading frame 41 [Macaca mulatta]	278.0	[0..1]	[142..1]
HSPB11 - heat shock protein family B (small), member 11	278.0	[0..1]	[142..1]
gi\|114556694, gi... - gi\|55587102\|ref\|XP_513418.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes], gi\|1145566...	277.0	[0..1]	[142..1]
gi\|115497322, gi... - gi\|115497322\|ref\|NP_001069880.1\| chromosome 1 open reading frame 41 [Bos taurus], gi\|109659249\|gb\|AA...	272.0	[0..1]	[142..1]
gi\|50751634 - gi\|50751634\|ref\|XP_422488.1\| PREDICTED: similar to C1orf41 protein [Gallus gallus]	186.0	[0..1]	[137..1]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKVDLCSVT EGTEVILATS SDEKHPPENI IDGNPETFWT TTGMFPQEFI ICFHKHVKIE  60
   61 KLVIQSYLVR TLRIEKTTSK EPLDFEQWVE KDLVHTEGQL QNEEIVARDG YATFLRFIIV 120
  121 SAFDHFASVH SISAEGLTVS SLP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.69897
Match:	1tvgA
Description:	X-ray structure of human PP25 gene product, HSPC034. Northeast Structural Genomics Target HR1958.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits