YRC Public Data Repository - Protein Structure Prediction

Protein:	CEBPE_MOUSE
Organism:	Mus musculus
Length:	281 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CEBPE_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|80478782 - gi\|80478782\|gb\|AAI08955.1\| CCAAT/enhancer binding protein (C/EBP), epsilon [Mus musculus]	187.0	[0..1]	[281..1]
CEBPE_RAT - CCAAT/enhancer-binding protein epsilon OS=Rattus norvegicus GN=Cebpe PE=1 SV=2	186.0	[0..1]	[281..1]
gi\|109082934 - gi\|109082934\|ref\|XP_001106328.1\| PREDICTED: similar to CCAAT/enhancer binding protein epsilon [Macac...	185.0	[0..1]	[281..1]
gi\|190689717, gi... - gi\|190691081\|gb\|ACE87315.1\| CCAAT/enhancer binding protein (C/EBP), epsilon protein [synthetic const... CEBPE - CCAAT/enhancer binding protein (C/EBP), epsilon	183.0	[0..1]	[281..1]
CEBPE_SHEEP - CCAAT/enhancer-binding protein epsilon OS=Ovis aries GN=CEBPE PE=2 SV=1	181.0	[0..1]	[281..1]
gi\|61842141 - gi\|61842141\|ref\|XP_614092.1\| PREDICTED: similar to CCAAT-enhancer binding protein epsilon gene [Bos ...	181.0	[0..1]	[281..1]
gi\|114652112 - gi\|114652112\|ref\|XP_001161080.1\| PREDICTED: CCAAT/enhancer binding protein epsilon [Pan troglodytes]	181.0	[0..1]	[281..1]
gi\|57090429 - gi\|57090429\|ref\|XP_547729.1\| PREDICTED: similar to CCAAT/enhancer binding protein epsilon [Canis fam...	180.0	[0..1]	[280..1]

Back

Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHGTYYECE PRGGQQPLEF SGGRAGPGEL GDMCEHEASI DLSAYIESGE EQLLSDLFAM  60
   61 KPTPEARSLK GPGAPSFPHY LPADPRPFAY PSHTFGPDRK ALGPGIYSNP GSYDPRAVAV 120
  121 KEEPRGPEGN RGTSRGSYNP LQYQVAHCGQ TAVHLPPTLA APGQPLRVLK APVAAAAPPC 180
  181 SPLLKAPSPA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [191-281]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPSHKGKKAV NKDSLEYRLR RERNNIAVRK SRDKAKRRIM ETQQKVLEYM AENERLRNRV  60
   61 DQLTQELDTL RNLFRQIPEA ASLIKGVGGC S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.522879
Match:	1hjbA
Description:	C/ebp beta
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits