YRC Public Data Repository - Protein Structure Prediction

Protein:	Q66DR5\|Q66DR5_YERPS
Organism:	Yersinia pseudotuberculosis
Length:	67 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Q66DR5|Q66DR5_YERPS.

Description	E-value	Query Range	Subject Range
gi\|47154986 - gi\|47154986\|emb\|CAE85185.1\| hypothetical protein [Escherichia coli] gi\|190907823, gi... - gi\|191171788\|ref\|ZP_03033334.1\| haemolysin expression modulating protein [Escherichia coli F11], gi\|... gi\|110344744, gi... - gi\|110643152\|ref\|YP_670882.1\| putative hemolysin expression modulating protein [Escherichia coli 536...	4.0E-26	[2..66]	[63..127]
gi\|9971679, gi\|1... - gi\|9971679\|dbj\|BAB12630.1\| ydfA [Escherichia coli], gi\|10955485\|ref\|NP_065337.1\| transcriptional reg...	1.0E-25	[2..66]	[10..74]
gi\|253782325, gi... - gi\|253990875\|ref\|YP_003042231.1\| Haemolysin expression modulating protein [Photorhabdus asymbiotica]... gi\|36787149, gi\|... - gi\|37527713\|ref\|NP_931058.1\| hemolysin expression-modulating protein [Photorhabdus luminescens subsp...	2.0E-24	[1..67]	[1..67]
gi\|117622719, gi... - gi\|117622719\|ref\|YP_851632.1\| Hha protein [Escherichia coli APEC O1], gi\|115511843\|gb\|ABI99917.1\| Hh...	2.0E-24	[1..67]	[73..139]
gi\|38639695, gi\|... - gi\|38639695\|ref\|NP_943464.1\| hemolysin expression-modulating protein [Klebsiella pneumoniae], gi\|380...	1.0E-23	[1..67]	[1..67]
gi\|75241217 - gi\|75241217\|ref\|ZP_00725079.1\| hypothetical protein EcolF_01001780 [Escherichia coli F11]	2.0E-23	[2..66]	[5..69]
gi\|26246473, gi\|... - gi\|26246473\|ref\|NP_752512.1\| hemolysin expression-modulating protein [Escherichia coli CFT073], gi\|2... gi\|91209533, gi\|... - gi\|91209533\|ref\|YP_539519.1\| hemolysin expression-modulating protein [Escherichia coli UTI89], gi\|91... gi\|24050637, gi\|... - ref\|NP_706353.1\| hha protein [Shigella flexneri 2a str. 301], gb\|AAN42060.1\| hha protein [Shigella ... gi\|170021152, gi... - gi\|170021152\|ref\|YP_001726106.1\| hemolysin expression-modulating protein [Escherichia coli ATCC 8739...	1.0E-22	[1..67]	[10..76]
gi\|213612548 - gi\|213612548\|ref\|ZP_03370374.1\| Hha protein [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213579729 - gi\|213579729\|ref\|ZP_03361555.1\| Hha protein [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213427134 - gi\|213427134\|ref\|ZP_03359884.1\| Hha protein [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213162901 - gi\|213162901\|ref\|ZP_03348611.1\| Hha protein [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|224466837, gi... - gi\|224582310\|ref\|YP_002636108.1\| hemolysin expression modulating protein [Salmonella enterica subsp.... gi\|218357413, gi... - gi\|218549872\|ref\|YP_002383663.1\| hemolysin expression-modulating protein [Escherichia fergusonii ATC... gi\|213974347 - gi\|213974347\|ref\|ZP_03401606.1\| Hha protein [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213855677 - gi\|213855677\|ref\|ZP_03383917.1\| Hha protein [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|199602449, gi... - gi\|200390004\|ref\|ZP_03216615.1\| hemolysin expression modulating protein [Salmonella enterica subsp. ... gi\|198242168, gi... - gi\|198242168\|ref\|YP_002214426.1\| haemolysin expression modulating protein [Salmonella enterica subsp... gi\|197363292, gi... - gi\|197363292\|ref\|YP_002142929.1\| hemolysin expression-modulating protein [Salmonella enterica subsp.... gi\|197262964, gi... - gi\|197262964\|ref\|ZP_03163038.1\| haemolysin expression modulating protein [Salmonella enterica subsp.... gi\|213022096 - gi\|213022096\|ref\|ZP_03336543.1\| Hha protein [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|207855952, gi... - gi\|207855952\|ref\|YP_002242603.1\| hemolysin expression-modulating protein [Salmonella enterica subsp.... gi\|205271562, gi... - gi\|205351781\|ref\|YP_002225582.1\| hemolysin expression-modulating protein [Salmonella enterica subsp.... gi\|204320495, gi... - gi\|204930561\|ref\|ZP_03221491.1\| hemolysin expression modulating protein [Salmonella enterica subsp. ... gi\|16759453 - gi\|16759453\|ref\|NP_455070.1\| hemolysin expression-modulating protein [Salmonella enterica subsp. ent... gi\|7677481\|gb\|AA... - Hha [Salmonella typhimurium] gi\|62126718, gi\|... - gi\|62179085\|ref\|YP_215502.1\| hemolysin expression-modulating protein [Salmonella enterica subsp. ent... gi\|56128629, gi\|... - gi\|56414372\|ref\|YP_151447.1\| hemolysin expression-modulating protein [Salmonella enterica subsp. ent... gi\|16418980, gi\|... - gi\|16763853\|ref\|NP_459468.1\| hemolysin expression-modulating protein [Salmonella typhimurium LT2], g... gi\|29138407, gi\|... - gi\|29142775\|ref\|NP_806117.1\| hemolysin expression-modulating protein [Salmonella enterica subsp. ent... gi\|238911397 - gi\|238911397\|ref\|ZP_04655234.1\| modulator of gene expression, with H-NS [Salmonella enterica subsp. ... gi\|7677481 - gi\|7677481\|gb\|AAF67181.1\|AF242359_1 Hha [Salmonella typhimurium] gi\|16501745, gi\|... - gi\|25324713\|pir\|\|AD0561 haemolysin expression modulating protein [imported] - Salmonella enterica su... gi\|194402018, gi... - gi\|194443355\|ref\|YP_002039716.1\| haemolysin expression modulating protein [Salmonella enterica subsp... gi\|170767694, gi... - gi\|170767694\|ref\|ZP_02902147.1\| haemolysin expression modulating protein [Escherichia albertii TW076... gi\|205344032, gi... - gi\|205344032\|gb\|EDZ30796.1\| hemolysin expression modulating protein [Salmonella enterica subsp. ente... gi\|168465568, gi... - gi\|195631992\|gb\|EDX50512.1\| hemolysin expression modulating protein [Salmonella enterica subsp. ente... gi\|197248594, gi... - gi\|197248594\|ref\|YP_002145454.1\| haemolysin expression modulating protein [Salmonella enterica subsp... lcl\|NC_016856.1_... - [gene=hha] [protein=hemolysin expression-modulating protein] [protein_id=YP_005236170.1] [location=c... gi\|194738349, gi... - gi\|194738349\|ref\|YP_002113504.1\| haemolysin expression modulating protein [Salmonella enterica subsp... gi\|194472363, gi... - gi\|194472363\|ref\|ZP_03078347.1\| haemolysin expression modulating protein [Salmonella enterica subsp.... gi\|194410060, gi... - gi\|194451756\|ref\|YP_002044507.1\| hemolysin expression-modulating protein [Salmonella enterica subsp.... gi\|205330854, gi... - gi\|205330854\|gb\|EDZ17618.1\| hemolysin expression modulating protein [Salmonella enterica subsp. ente... gi\|205323452, gi... - gi\|205323452\|gb\|EDZ11291.1\| hemolysin expression modulating protein [Salmonella enterica subsp. ente... gi\|161615331, gi... - gi\|161615331\|ref\|YP_001589296.1\| hemolysin expression-modulating protein [Salmonella enterica subsp.... gi\|160865698, gi... - gi\|161504351\|ref\|YP_001571463.1\| hemolysin expression-modulating protein [Salmonella enterica subsp.... gi\|205349698, gi... - gi\|205349698\|gb\|EDZ36329.1\| hemolysin expression modulating protein [Salmonella enterica subsp. ente... gi\|168240303, gi... - gi\|205340242\|gb\|EDZ27006.1\| hemolysin expression modulating protein [Salmonella enterica subsp. ente... gi\|168237588, gi... - gi\|197289517\|gb\|EDY28880.1\| hemolysin expression modulating protein [Salmonella enterica subsp. ente... gi\|205333948, gi... - gi\|205333948\|gb\|EDZ20712.1\| hemolysin expression modulating protein [Salmonella enterica subsp. ente...	1.0E-22	[1..67]	[6..72]
gi\|187731539, gi... - gi\|75177595\|ref\|ZP_00697676.1\| hypothetical protein SboyB_01002558 [Shigella boydii BS512], gi\|18773... gi\|75189528 - gi\|75189528\|ref\|ZP_00702795.1\| hypothetical protein EcolE_01002813 [Escherichia coli E24377A] gi\|194432706, gi... - gi\|83570211\|ref\|ZP_00921657.1\| hypothetical protein Sdys1_01001496 [Shigella dysenteriae 1012], gi\|1... gi\|83587085, gi\|... - gi\|83587085\|ref\|ZP_00925715.1\| hypothetical protein Ecol1_01001828 [Escherichia coli 101-1], gi\|1944... HHA_ECOLI - Hemolysin expression-modulating protein - Escherichia coli gi\|20150561 - pdb\|1JW2\|A Chain A, Solution Structure Of Hemolysin Expression Modulating Protein Hha From Escherich... HHA_SHIFL - Hemolysin expression-modulating protein Hha OS=Shigella flexneri GN=hha PE=3 SV=1 gi\|30061960, gi\|... - gi\|30061960\|ref\|NP_836131.1\| hemolysin expression-modulating protein [Shigella flexneri 2a str. 2457... EG10439 - modulator of gene expression, with H-NS / Modulates hemolysin expression, in complex with H-NS; stim... HHA_ECO57 - Hemolysin expression-modulating protein Hha OS=Escherichia coli O157:H7 GN=hha PE=3 SV=1 HHA_ECOL6 - Hemolysin expression-modulating protein Hha OS=Escherichia coli O6 GN=hha PE=3 SV=1 EG10439 - modulator of gene expression, with H-NS / Modulates hemolysin expression, in complex with H-NS; stim... gi\|12513327, gi\|... - gi\|15800189\|ref\|NP_286201.1\| hemolysin expression-modulating protein [Escherichia coli O157:H7 EDL93... gi\|124499314, gi... - gi\|124530289\|ref\|ZP_01701008.1\| Haemolysin expression modulating family protein [Escherichia coli B]... gi\|217324962, gi... - gi\|217324962\|ref\|ZP_03441046.1\| hemolysin expression modulating protein [Escherichia coli O157:H7 st... gi\|218359794, gi... - gi\|218553026\|ref\|YP_002385939.1\| hemolysin expression-modulating protein [Escherichia coli IAI1], gi... gi\|218425887, gi... - gi\|218688323\|ref\|YP_002396535.1\| hemolysin expression-modulating protein [Escherichia coli ED1a], gi... gi\|218698629, gi... - gi\|218698629\|ref\|YP_002406258.1\| hemolysin expression-modulating protein [Escherichia coli IAI39], g... gi\|218430840, gi... - gi\|218703743\|ref\|YP_002411262.1\| hemolysin expression-modulating protein [Escherichia coli UMN026], ... gi\|170683314, gi... - gi\|170683314\|ref\|YP_001742604.1\| haemolysin expression modulating protein [Escherichia coli SMS-3-5]... gi\|195936023 - gi\|195936023\|ref\|ZP_03081405.1\| Hha protein [Escherichia coli O157:H7 str. EC4024] gi\|208728571, gi... - gi\|208808770\|ref\|ZP_03251107.1\| hemolysin expression modulating protein [Escherichia coli O157:H7 st... gi\|208815252, gi... - gi\|208815252\|ref\|ZP_03256431.1\| hemolysin expression modulating protein [Escherichia coli O157:H7 st... gi\|208737472, gi... - gi\|208823279\|ref\|ZP_03263597.1\| hemolysin expression modulating protein [Escherichia coli O157:H7 st... gi\|209400347, gi... - gi\|209400347\|ref\|YP_002269110.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 ... gi\|209917676, gi... - gi\|209917676\|ref\|YP_002291760.1\| hemolysin expression-modulating protein [Escherichia coli SE11], gi... gi\|215485540, gi... - gi\|215485540\|ref\|YP_002327971.1\| hemolysin expression-modulating protein [Escherichia coli O127:H6 s... gi\|227884528, gi... - gi\|227884528\|ref\|ZP_04002333.1\| hemolysin expression modulating protein Hha [Escherichia coli 83972]... gi\|237707544, gi... - gi\|237707544\|ref\|ZP_04538025.1\| hha protein [Escherichia sp. 3_2_53FAA], gi\|226898754\|gb\|EEH85013.1\|... gi\|251783969, gi... - gi\|251783969\|ref\|YP_002998273.1\| hypothetical protein B21_00416 [Escherichia coli BL21], gi\|24237624... gi\|254287333, gi... - gi\|254287333\|ref\|YP_003053081.1\| modulator of gene expression, with H-NS [Escherichia coli BL21(DE3)... gi\|253972430, gi... - gi\|254160529\|ref\|YP_003043637.1\| modulator of gene expression, with H-NS [Escherichia coli B str. RE... gi\|254791643, gi... - gi\|254791643\|ref\|YP_003076480.1\| hemolysin expression modulating protein [Escherichia coli O157:H7 s... HHA_ECOL6 - Hemolysin expression-modulating protein Hha OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 /... gi\|85674599, gi\|... - gi\|89107329\|ref\|AP_001109.1\| modulator of gene expression, with H-NS [Escherichia coli str. K-12 sub... gi\|168747864, gi... - gi\|188017700\|gb\|EDU55822.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... gi\|56479667, gi\|... - gi\|56479667\|ref\|NP_706353.2\| hemolysin expression-modulating protein [Shigella flexneri 2a str. 301]... gi\|189357980, gi... - gi\|189357980\|gb\|EDU76399.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... gi\|82775809, gi\|... - gi\|82775809\|ref\|YP_402156.1\| hemolysin expression-modulating protein [Shigella dysenteriae Sd197], g... gi\|168760385, gi... - gi\|189369164\|gb\|EDU87580.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... gi\|81244364, gi\|... - gi\|82542953\|ref\|YP_406900.1\| hemolysin expression-modulating protein [Shigella boydii Sb227], gi\|812... gi\|168768415, gi... - gi\|189362448\|gb\|EDU80867.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... gi\|187767541, gi... - gi\|187767541\|gb\|EDU31385.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... gi\|168778953, gi... - gi\|189002726\|gb\|EDU71712.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... gi\|189373478, gi... - gi\|189373478\|gb\|EDU91894.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... gi\|168798024, gi... - gi\|189379277\|gb\|EDU97693.1\| haemolysin expression modulating protein [Escherichia coli O157:H7 str. ... gi\|75229379, gi\|... - gi\|75229379\|ref\|ZP_00715934.1\| hypothetical protein EcolB7_01002423 [Escherichia coli B7A], gi\|19116... gi\|190906059, gi... - gi\|75238212\|ref\|ZP_00722213.1\| hypothetical protein EcolF_01003537 [Escherichia coli F11], gi\|191173... gi\|157159986, gi... - gi\|75194680\|ref\|ZP_00704750.1\| hypothetical protein EcolH_01000459 [Escherichia coli HS], gi\|1571599... gi\|75209784, gi\|... - gi\|75209784\|ref\|ZP_00709986.1\| hypothetical protein EcolB_01003082 [Escherichia coli B171], gi\|19442... gi\|188495333, gi... - gi\|75514583\|ref\|ZP_00736838.1\| hypothetical protein Ecol5_01001357 [Escherichia coli 53638], gi\|1884... gi\|15829767, gi\|... - gi\|15829767\|ref\|NP_308540.1\| hemolysin expression-modulating protein [Escherichia coli O157:H7 str. ... gi\|73854516, gi\|... - gi\|74311039\|ref\|YP_309458.1\| hemolysin expression-modulating protein [Shigella sonnei Ss046], gi\|738... gi\|110342313, gi... - gi\|110640721\|ref\|YP_668449.1\| hemolysin expression-modulating protein [Escherichia coli 536], gi\|110... gi\|192959003, gi... - gi\|75239044\|ref\|ZP_00723026.1\| hypothetical protein EcolE1_01000811 [Escherichia coli E110019], gi\|1... gi\|75257895, gi\|... - gi\|75257895\|ref\|ZP_00729373.1\| hypothetical protein EcolE2_01002378 [Escherichia coli E22], gi\|19306...	2.0E-22	[1..67]	[6..72]

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Predicted Domain #1

Region A:
Residues: [1-67]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKTDYLMRL RKCTTIDTLE RVIEKNKYEL SDDELELFYS AADHRLAELT MNKLYDKIPP  60
   61 TVWQHVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.09691
Match:	1jw2A
Description:	Hemolysin expression modulating protein HHA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits