YRC Public Data Repository - Protein Structure Prediction

Protein:	Q66DM3\|Q66DM3_YERPS
Organism:	Yersinia pseudotuberculosis
Length:	269 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Q66DM3|Q66DM3_YERPS.

Description	E-value	Query Range	Subject Range
gi\|77631979, gi\|... - gi\|77631979\|ref\|ZP_00794565.1\| COG3735: Uncharacterized protein conserved in bacteria [Yersinia pseu...	1.0E-67	[1..269]	[1..269]
gi\|36787121, gi\|... - gi\|37527686\|ref\|NP_931030.1\| hypothetical protein plu3826 [Photorhabdus luminescens subsp. laumondii...	4.0E-67	[1..269]	[1..269]
gi\|227884505, gi... - gi\|227884505\|ref\|ZP_04002310.1\| GumN family protein [Escherichia coli 83972], gi\|227838591\|gb\|EEJ490... gi\|26246497, gi\|... - gi\|26246497\|ref\|NP_752536.1\| hypothetical protein c0602 [Escherichia coli CFT073], gi\|26106895\|gb\|AA...	4.0E-66	[4..265]	[3..264]
gi\|83570184, gi\|... - gi\|83570184\|ref\|ZP_00921630.1\| COG3735: Uncharacterized protein conserved in bacteria [Shigella dyse...	2.0E-65	[4..265]	[3..264]
gi\|75177571, gi\|... - gi\|75177571\|ref\|ZP_00697652.1\| COG3735: Uncharacterized protein conserved in bacteria [Shigella boyd... gi\|81244387, gi\|... - gi\|82542976\|ref\|YP_406923.1\| putative ligase [Shigella boydii Sb227], gi\|81244387\|gb\|ABB65095.1\| put...	4.0E-65	[4..265]	[3..264]
gi\|168778978, gi... - gi\|189002847\|gb\|EDU71833.1\| GumN family protein [Escherichia coli O157:H7 str. EC4076], gi\|168778978... gi\|187769790, gi... - gi\|187769790\|gb\|EDU33634.1\| GumN family protein [Escherichia coli O157:H7 str. EC4196], gi\|168774551... gi\|209778268, gi... - pir\|\|C85546 probable ligase ybaP [imported] - Escherichia coli (strain O157:H7, substrain EDL933), ... gi\|168798048, gi... - gi\|189379318\|gb\|EDU97734.1\| GumN family protein [Escherichia coli O157:H7 str. EC508], gi\|168798048\|... gi\|254791665, gi... - gi\|254791665\|ref\|YP_003076502.1\| hypothetical protein ECSP_0549 [Escherichia coli O157:H7 str. TW143... gi\|168786336, gi... - gi\|189373664\|gb\|EDU92080.1\| GumN family protein [Escherichia coli O157:H7 str. EC869], gi\|168786336\|... gi\|12513355, gi\|... - gi\|15800211\|ref\|NP_286223.1\| putative ligase [Escherichia coli O157:H7 EDL933], gi\|12513355\|gb\|AAG54... gi\|168754589, gi... - gi\|189358073\|gb\|EDU76492.1\| GumN family protein [Escherichia coli O157:H7 str. EC4401], gi\|168754589... gi\|15829789, gi\|... - gi\|15829789\|ref\|NP_308562.1\| putative ligase [Escherichia coli O157:H7], gi\|13359992\|dbj\|BAB33958.1\|... gi\|168747840, gi... - gi\|188017626\|gb\|EDU55748.1\| GumN family protein [Escherichia coli O157:H7 str. EC4113], gi\|168747840... gi\|15829789, gi\|... - gi\|15829789\|ref\|NP_308562.1\| putative ligase [Escherichia coli O157:H7 str. Sakai], gi\|13359992\|dbj\|... gi\|168768439, gi... - gi\|189362480\|gb\|EDU80899.1\| GumN family protein [Escherichia coli O157:H7 str. EC4486], gi\|168768439... gi\|189369100, gi... - gi\|189369100\|gb\|EDU87516.1\| GumN family protein [Escherichia coli O157:H7 str. EC4501], gi\|168760361... gi\|217320723, gi... - gi\|217324502\|ref\|ZP_03440586.1\| GumN family protein [Escherichia coli O157:H7 str. TW14588], gi\|2173... gi\|209398745, gi... - gi\|209398745\|ref\|YP_002269133.1\| GumN family protein [Escherichia coli O157:H7 str. EC4115], gi\|2091... gi\|208808096, gi... - gi\|208808096\|ref\|ZP_03250433.1\| GumN family protein [Escherichia coli O157:H7 str. EC4206], gi\|20872... gi\|195936045 - gi\|195936045\|ref\|ZP_03081427.1\| putative ligase [Escherichia coli O157:H7 str. EC4024] gi\|208737207, gi... - gi\|208823014\|ref\|ZP_03263332.1\| GumN family protein [Escherichia coli O157:H7 str. EC4042], gi\|20873... gi\|208815155, gi... - gi\|208815155\|ref\|ZP_03256334.1\| GumN family protein [Escherichia coli O157:H7 str. EC4045], gi\|20873...	4.0E-65	[4..265]	[3..264]
gi\|218557394, gi... - gi\|218557394\|ref\|YP_002390307.1\| hypothetical protein ECS88_0481 [Escherichia coli S88], gi\|21836416... gi\|218425910, gi... - gi\|218688346\|ref\|YP_002396558.1\| hypothetical protein ECED1_0506 [Escherichia coli ED1a], gi\|2184259... gi\|91209558, gi\|... - gi\|91209558\|ref\|YP_539544.1\| putative ligase [Escherichia coli UTI89], gi\|91071132\|gb\|ABE06013.1\| pu... gi\|237707518, gi... - gi\|237707518\|ref\|ZP_04537999.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|117622741, gi... - gi\|117622741\|ref\|YP_851654.1\| putative ligase [Escherichia coli APEC O1], gi\|115511865\|gb\|ABI99939.1...	5.0E-65	[4..265]	[3..264]
gi\|157160009, gi... - gi\|75194702\|ref\|ZP_00704772.1\| COG3735: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|218350676, gi... - gi\|218693944\|ref\|YP_002401611.1\| hypothetical protein EC55989_0495 [Escherichia coli 55989], gi\|2183... gi\|73854540, gi\|... - gi\|74311063\|ref\|YP_309482.1\| putative ligase [Shigella sonnei Ss046], gi\|73854540\|gb\|AAZ87247.1\| put... gi\|75514605, gi\|... - gi\|75514605\|ref\|ZP_00736860.1\| COG3735: Uncharacterized protein conserved in bacteria [Escherichia c...	6.0E-65	[4..265]	[3..264]
gi\|24050662, gi\|... - gi\|24111865\|ref\|NP_706375.1\| putative ligase [Shigella flexneri 2a str. 301], gi\|24050662\|gb\|AAN4208... YBAP_SHIFL - Uncharacterized protein YbaP OS=Shigella flexneri GN=ybaP PE=4 SV=1	6.0E-65	[4..265]	[3..264]
gi\|110640745, gi... - gi\|110640745\|ref\|YP_668473.1\| hypothetical protein ECP_0545 [Escherichia coli 536], gi\|110342337\|gb\|... gi\|191173695, gi... - gi\|75238236\|ref\|ZP_00722237.1\| COG3735: Uncharacterized protein conserved in bacteria [Escherichia c...	6.0E-65	[4..265]	[3..264]

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Predicted Domain #1

Region A:
Residues: [1-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKLLRRIAK FLGIITPTTY AYPALDITLP GERHLHLVGS IHMGTAGMFP LPHTLLNKLN  60
   61 QADALIVEAD ITDATSSFGH STVTEPLVDR LSEEYYPQLQ RRCEELGSDP LAMTYLPAWQ 120
  121 VALMLQAHQA QRLGLRGEYG IDYQLLKAAG AQEKEIIELE GAEMQLDLLK TLPDNGISLL 180
  181 HDTLLHWHTN ARLLQTMIGW WLEHQPEKYQ ATLAPTFSHD MYDVLMLQRN KRWQQQLEQL 240
  241 APGRYVVAVG ALHLYGEGNL PELLRADNQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.16
Match:	2g5gX
Description:	No description for 2g5gX was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits