YRC Public Data Repository - Protein Structure Prediction

Protein:	Q66DF1\|Q66DF1_YERPS
Organism:	Yersinia pseudotuberculosis
Length:	360 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Q66DF1|Q66DF1_YERPS.

Description	E-value	Query Range	Subject Range
gi\|167052194, gi... - gi\|167399690\|ref\|ZP_02305214.1\| rare lipoprotein A/sporulation and cell division repeat protein [Yer... gi\|108808488, gi... - gi\|108808488\|ref\|YP_652404.1\| rare lipoprotein A [Yersinia pestis Antiqua], gi\|108780401\|gb\|ABG14459...	2.0E-74	[1..360]	[1..360]
gi\|162352712, gi... - gi\|77636540\|ref\|ZP_00798613.1\| COG0797: Lipoproteins [Yersinia pestis Angola], gi\|162419897\|ref\|YP_0...	6.0E-74	[1..360]	[1..360]
gi\|238790458, gi... - gi\|77973029\|ref\|ZP_00828582.1\| COG0797: Lipoproteins [Yersinia frederiksenii ATCC 33641], gi\|2387904...	7.0E-68	[1..360]	[1..372]
gi\|238729254, gi... - gi\|77979031\|ref\|ZP_00834453.1\| COG0797: Lipoproteins [Yersinia intermedia ATCC 29909], gi\|238791638\|...	2.0E-67	[1..360]	[1..367]
gi\|238720529, gi... - gi\|77962169\|ref\|ZP_00825993.1\| COG0797: Lipoproteins [Yersinia mollaretii ATCC 43969], gi\|238795410\|...	3.0E-67	[1..360]	[1..372]
gi\|77957577 - gi\|77957577\|ref\|ZP_00821629.1\| COG0797: Lipoproteins [Yersinia bercovieri ATCC 43970]	3.0E-67	[1..360]	[1..370]
gi\|37525262, gi\|... - gi\|37525262\|ref\|NP_928606.1\| rare lipoprotein A [Photorhabdus luminescens subsp. laumondii TTO1], gi...	1.0E-62	[1..359]	[1..332]
gi\|107103515 - gi\|107103515\|ref\|ZP_01367433.1\| hypothetical protein PaerPA_01004585 [Pseudomonas aeruginosa PACS2] gi\|218769942, gi... - gi\|218889719\|ref\|YP_002438583.1\| putative lipoprotein, rlpA family [Pseudomonas aeruginosa LESB58], ... gi\|126196062, gi... - gi\|84325132\|ref\|ZP_00973172.1\| COG0797: Lipoproteins [Pseudomonas aeruginosa 2192], gi\|254242684\|ref... RLPA_PSEAE - RlpA-like lipoprotein OS=Pseudomonas aeruginosa GN=rlpA PE=3 SV=1 RLPA_PSEAE - RlpA-like lipoprotein OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228...	2.0E-61	[7..359]	[16..341]
gi\|152989135, gi... - gi\|94417067\|ref\|ZP_01296889.1\| hypothetical protein PaerP_01001263 [Pseudomonas aeruginosa PA7], gi\|...	6.0E-61	[7..359]	[16..341]
gi\|116052038, gi... - gi\|46164609\|ref\|ZP_00205119.1\| COG0797: Lipoproteins [Pseudomonas aeruginosa UCBPP-PA14], gi\|1160520...	2.0E-60	[7..359]	[16..340]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKEWLWVGI ASVLLSACID QPPAPQQQVQ QTYSGPVEEI GGAEPRYEPF NPNVNQDYKV  60
   61 NGQSYRIIKD PQNFSQIGLA SSYGEEARGN TTATGEIFDP NALTAAHPTL PIPSYVRVTN 120
  121 VSNGRQIVVR VNDRGPYTPG RVIDLSRAAA DRLNISNNTK VKIDFINVAP D

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.14
Match:	2bh0A
Description:	No description for 2bh0A was found.

Predicted Domain #2

Region A:
Residues: [172-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSLSGPGMVG TTIAKQSYAL PSRPDLTSSG MGTPMQQDAP ATGAAVQAID NSQLSGTDAT  60
   61 QPVASQSSGF LRAPTPVPAG VLESSEPVID SAPVTPPVVA NPGPVTTT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [280-360]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTSSAISGGY VVQVGALSDA QRAQSWQQSL SQRFGVPGKV SNSGSIYRVQ LGPFSHRQQA  60
   61 VDLQQRLSNE AQQQSFIVAA P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.0
Match:	1utaA
Description:	Solution structure of the C-terminal RNP domain from the divisome protein FtsN
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits