YRC Public Data Repository - Protein Structure Prediction

Protein:	UB2FB_MOUSE
Organism:	Mus musculus
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UB2FB_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|62738886 - gi\|62738886\|pdb\|1Z2U\|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme...	200.0	[0..29]	[184..1]
gi\|109502175 - gi\|109502175\|ref\|XP_001067024.1\| PREDICTED: similar to Ubiquitin-conjugating enzyme E2 E1 (Ubiquitin...	198.0	[0..5]	[184..182]
gi\|48095652, gi\|... - ref\|XP_392337.1\| similar to Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase) (Ubiqu...	197.0	[0..32]	[184..1]
gi\|87239726 - gi\|87239726\|emb\|CAJ57642.1\| putative ubiquitin conjugating enzyme 2 [Oesophagostomum dentatum]	197.0	[0..32]	[184..1]
gi\|83754945 - gi\|83754945\|pdb\|2ESK\|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type	197.0	[0..32]	[184..3]
gi\|11762186 - gi\|11762186\|gb\|AAG40371.1\|AF325019_1 AT4g27960 [Arabidopsis thaliana]	197.0	[0..32]	[184..31]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTLASKLKW DEDLKGSQTS VSTSDSTRRF SMRDKLLVTE VAELEANLPW TCKVHFPDPN  60
   61 KLHCFQLTVS PDEGYYQGGN FQFEIEVPDA YNMVPPKVKC LTKIWHPNIT ETGEICLSLL 120
  121 REHSADGTGW APTRTLKDVV WGLNSLFTDL LNFYDPLNIE AAEHHLQDKE DFRDKVDEYI 180
  181 RRYAR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.045757
Match:	2ediA
Description:	No description for 2ediA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits