YRC Public Data Repository - Protein Structure Prediction

Protein:	CENPQ
Organism:	Homo sapiens
Length:	268 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CENPQ.

Description	E-value	Query Range	Subject Range
gi\|76615137 - gi\|76615137\|ref\|XP_598260.2\| PREDICTED: similar to Laminin beta-1 chain precursor (Laminin B1 chain)...	6.0E-31	[4..265]	[1625..1915]
gi\|293690, gi\|33... - gi\|33859490\|ref\|NP_032508.1\| laminin B1 subunit 1 [Mus musculus], gi\|293690\|gb\|AAA39407.1\| laminin B...	1.0E-30	[4..267]	[1519..1797]
gi\|73981723 - gi\|73981723\|ref\|XP_533089.2\| PREDICTED: similar to Laminin beta-1 chain precursor (Laminin B1 chain)...	7.0E-30	[4..265]	[1340..1637]
gi\|114615458, gi... - gi\|114615460\|ref\|XP_001165667.1\| PREDICTED: laminin, beta 1 isoform 6 [Pan troglodytes], gi\|11461545...	1.0E-28	[1..265]	[1461..1768]
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	4.0E-25	[7..268]	[2209..2468]
gi\|40789028 - gi\|40789028\|dbj\|BAA82994.2\| KIAA1042 protein [Homo sapiens]	9.0E-22	[5..238]	[185..419]
gi\|14017756, gi\|... - gi\|50838836\|ref\|NP_001001302.1\| myosin, heavy chain 7, cardiac muscle, beta [Gallus gallus], gi\|1401...	3.0E-20	[3..268]	[1196..1465]

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Predicted Domain #1

Region A:
Residues: [1-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGKANASKK NAQQLKRNPK RKKDNEEVVL SENKVRNTVK KNKNHLKDLS SEGQTKHTNL  60
   61 KHGKTAASKR KTWQPLSKST RDHLQTMMES VIMTILSNSI KEKEEIQYHL NFLKKRLLQQ 120
  121 CETLKVPPKK MEDLTNVSSL LNMERARDKA NEEGLALLQE EIDKMVETTE LMTGNIQSLK 180
  181 NKIQILASEV EEEEERVKQM HQINSSGVLS LPELSQKTLK APTLQKEILA LIPNQNALLK 240
  241 DLDILHNSSQ MKSMSTFIEE AYKKLDAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	2tmaA
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits