YRC Public Data Repository - Protein Structure Prediction

Protein:	RRAGB
Organism:	Homo sapiens
Length:	374 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRAGB.

Description	E-value	Query Range	Subject Range
gi\|1063398, gi\|2... - pir\|\|I38177 ras-related GTPase rag, splice form B [imported] - human, gi\|1063398\|emb\|CAA62132.1\| ra...	0.0	[1..374]	[1..374]
gi\|109130941 - gi\|109130941\|ref\|XP_001093743.1\| PREDICTED: similar to Ras-related GTP binding B long isoform isofor...	0.0	[1..374]	[1..374]
RRAGB_MOUSE - Ras-related GTP-binding protein B OS=Mus musculus GN=Rragb PE=2 SV=1 RRAGB_RAT - Ras-related GTP-binding protein B OS=Rattus norvegicus GN=RragB PE=1 SV=1	0.0	[1..374]	[1..374]
gi\|74007065 - gi\|74007065\|ref\|XP_852073.1\| PREDICTED: similar to Ras-related GTP binding B long isoform isoform 2 ...	0.0	[1..373]	[1..373]
gi\|115497160, gi... - gi\|115497160\|ref\|NP_001068747.1\| Ras-related GTP binding B [Bos taurus], gi\|109658285\|gb\|AAI18273.1\|...	0.0	[1..374]	[1..374]
gi\|114688824 - gi\|114688824\|ref\|XP_001148126.1\| PREDICTED: Ras-related GTP binding B isoform 1 [Pan troglodytes]	0.0	[1..374]	[1..380]

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Predicted Domain #1

Region A:
Residues: [1-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEESDSEKTT EKENLGPRMD PPLGEPEGSL GWVLPNTAMK KKVLLMGKSG SGKTSMRSII  60
   61 FANYIARDTR RLGATILDRI HSLQINSSLS TYSLVDSVGN TKTFDVEHSH VRFLGNLVLN 120
  121 LWDCGGQDTF MENYFTSQRD NIFRNVEVLI YVFDVESREL EKDMHYYQSC LEAILQNSPD 180
  181 AKIFCLVHKM DLVQEDQRDL IFKEREEDLR RLSRPLECSC FRTSIWDETL YKAWSSIVYQ 240
  241 LI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.69897
Match:	2q3fA
Description:	No description for 2q3fA was found.

Predicted Domain #2

Region A:
Residues: [243-374]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNVQQLEMNL RNFAEIIEAD EVLLFERATF LVISHYQCKE QRDAHRFEKI SNIIKQFKLS  60
   61 CSKLAASFQS MEVRNSNFAA FIDIFTSNTY VMVVMSDPSI PSAATLINIR NARKHFEKLE 120
  121 RVDGPKQCLL MR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	27.0
Match:	PF04670.3
Description:	No description for PF04670.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.983	N/A	N/A	d.110.4	SNARE-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits