YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|66267465, gi\|...
Organism:	Homo sapiens
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|66267465, gi|....

Description	E-value	Query Range	Subject Range
gi\|12002020 - gi\|12002020\|gb\|AAG43153.1\|AF063594_1 brain my036 protein [Homo sapiens]	1.0E-50	[1..246]	[1..246]
tr\|G3GUN3\|G3GUN3... - Inhibitor of growth protein OS=Cricetulus griseus GN=I79_001399 PE=3 SV=1 gi\|26341284, gi\|... - gi\|26341284\|dbj\|BAC34304.1\| unnamed protein product [Mus musculus], gi\|19111152\|ref\|NP_579923.1\| inh...	2.0E-50	[1..248]	[1..248]
gi\|542154536\|ref... - PREDICTED: inhibitor of growth protein 4 isoform X1 [Zonotrichia albicollis] ING4_CHICK - Inhibitor of growth protein 4 OS=Gallus gallus GN=ING4 PE=2 SV=1 gi\|224043893 - gi\|224043893\|ref\|XP_002196952.1\| PREDICTED: inhibitor of growth family, member 4 [Taeniopygia guttat...	2.0E-49	[1..248]	[1..249]
gi\|73997400 - gi\|73997400\|ref\|XP_853656.1\| PREDICTED: similar to Inhibitor of growth protein 4 isoform 2 [Canis fa...	5.0E-49	[1..248]	[1..249]
gi\|62648155, gi\|... - gi\|62648155\|ref\|XP_216265.3\| PREDICTED: similar to Inhibitor of growth protein 4 (p29ING4) [Rattus n...	6.0E-49	[1..248]	[1..249]
gi\|114643145 - gi\|114643145\|ref\|XP_001169091.1\| PREDICTED: inhibitor of growth family, member 4 [Pan troglodytes]	6.0E-49	[1..248]	[1..249]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGMYLEHY LDSIENLPFE LQRNFQLMRD LDQRTEDLKA EIDKLATEYM SSARSLSSEE  60
   61 KLALLKQIQE AYGKCKEFGD DKVQLAMQTY EMVDKHIRRL DTDLARFEAD LKEKQIESSD 120
  121 YDSSSSKGKK SRTQKEKKAA RARSKGKNSD EE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.988
Match:	1m1jC
Description:	Fibrinogen C-terminal domains; Fibrinogen gamma chain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [153-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APKTAQKKLK LVRTSPEYGM PSVTFGSVHP SDVLDMPVDP NEPTYCLCHQ VSYGEMIGCD  60
   61 NPDCSIEWFH FACVGLTTKP RGKWFCPRCS QERKKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.221849
Match:	1weuA
Description:	Solution structure of PHD domain in ING1-like protein BAC25009
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	2.6327300364647	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: