YRC Public Data Repository - Protein Structure Prediction

Protein:	HNRPUL1
Organism:	Homo sapiens
Length:	856 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HNRPUL1.

Description	E-value	Query Range	Subject Range
gi\|73947514, gi\|... - gi\|73947514\|ref\|XP_866594.1\| PREDICTED: similar to E1B-55kDa-associated protein 5 isoform b isoform ...	0.0	[1..856]	[1..856]
gi\|114677419 - gi\|114677419\|ref\|XP_001149509.1\| PREDICTED: similar to E1B-55kDa-associated protein 5 isoform b isof...	0.0	[1..856]	[1..856]
gi\|190690799, gi... - gi\|190690799\|gb\|ACE87174.1\| heterogeneous nuclear ribonucleoprotein U-like 1 protein [synthetic cons... gi\|12803479 - gi\|12803479\|gb\|AAH02564.1\| Heterogeneous nuclear ribonucleoprotein U-like 1 [Homo sapiens]	0.0	[1..856]	[1..856]
gi\|109124934 - gi\|109124934\|ref\|XP_001094712.1\| PREDICTED: similar to E1B-55kDa-associated protein 5 isoform b [Mac...	0.0	[1..611]	[1..611]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVRRLKVNE LREELQRRGL DTRGLKAELA ERLQAALEAE EPDDERELDA DDEPGRPGHI  60
   61 NEEVETEGGS ELEGTAQPPP PGLQPHAEPG GYSGPDGHYA MDNITRQNQF YDTQVIKQEN 120
  121 ESGYERRPLE MEQQQAYRPE MKTEMKQGAP TSFLPPEASQ LKPDRQQFQS RKRPYEENRG 180
  181 RGYFEHREDR RGRSPQPPAE EDEDDFD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.522879
Match:	1c1gA
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [208-411]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTLVAIDTYN CDLHFKVARD RSSGYPLTIE GFAYLWSGAR ASYGVRRGRV CFEMKINEEI  60
   61 SVKHLPSTEP DPHVVRIGWS LDSCSTQLGE EPFSYGYGGT GKKSTNSRFE NYGDKFAEND 120
  121 VIGCFADFEC GNDVELSFTK NGKWMGIAFR IQKEALGGQA LYPHVLVKNC AVEFNFGQRA 180
  181 EPYCSVLPGF TFIQHLPLSE RIRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.0
Match:	2v24A
Description:	No description for 2v24A was found.

Predicted Domain #3

Region A:
Residues: [412-603]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVGPKSKAEC EILMMVGLPA AGKTTWAIKH AASNPSKKYN ILGTNAIMDK MRVMGLRRQR  60
   61 NYAGRWDVLI QQATQCLNRL IQIAARKKRN YILDQTNVYG SAQRRKMRPF EGFQRKAIVI 120
  121 CPTDEDLKDR TIKRTDEEGK DVPDHAVLEM KANFTLPDVG DFLDEVLFIE LQREEADKLV 180
  181 RQYNEEGRKA GP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.3
Match:	2yvuA
Description:	No description for 2yvuA was found.

Predicted Domain #4

Region A:
Residues: [604-856]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPEKRFDNRG GGGFRGRGGG GGFQRYENRG PPGGNRGGFQ NRGGGSGGGG NYRGGFNRSG  60
   61 GGGYSQNRWG NNNRDNNNSN NRGSYNRAPQ QQPPPQQPPP PQPPPQQPPP PPSYSPARNP 120
  121 PGASTYNKNS NIPGSSANTS TPTVSSYSPP QPSYSQPPYN QGGYSQGYTA PPPPPPPPPA 180
  181 YNYGSYGGYN PAPYTPPPPP TAQTYPQPSY NQYQQYAQQW NQYYQNQGQW PPYYGNYDYG 240
  241 SYSGNTQGGT STQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.522879
Match:	1m2vB
Description:	Sec24
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits