YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|41202064, gi\|...
Organism:	Homo sapiens
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|41202064, gi|....

Description	E-value	Query Range	Subject Range
REP15_MOUSE - Rab15 effector protein OS=Mus musculus GN=Rep15 PE=2 SV=1	0.0	[1..236]	[1..230]
gi\|114645541 - gi\|114645541\|ref\|XP_001142876.1\| PREDICTED: Rab15 effector protein [Pan troglodytes]	0.0	[1..236]	[1..236]
gi\|50380113 - gi\|50380113\|gb\|AAT76304.1\| Rab15 effector protein [Homo sapiens]	0.0	[3..236]	[4..237]
gi\|109096007 - gi\|109096007\|ref\|XP_001103747.1\| PREDICTED: similar to Rab15 effector protein [Macaca mulatta]	0.0	[1..236]	[1..236]
gi\|109474506, gi... - gi\|62648340\|ref\|XP_575724.1\| PREDICTED: similar to 2210417D09Rik protein [Rattus norvegicus], gi\|157...	0.0	[1..236]	[1..230]
gi\|76638673 - gi\|76638673\|ref\|XP_871253.1\| PREDICTED: similar to Rab15 effector protein [Bos taurus]	0.0	[1..236]	[1..232]
gi\|68405416 - gi\|68405416\|ref\|XP_694288.1\| PREDICTED: similar to RIKEN cDNA 2210417D09 [Danio rerio]	2.0E-15	[25..187]	[11..177]
gi\|47210983 - gi\|47210983\|emb\|CAF95402.1\| unnamed protein product [Tetraodon nigroviridis]	5.0E-15	[28..224]	[65..265]

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Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQKASQQLA LKDSKEVPVV CEVVSEAIVH AAQKLKEYLG FEYPPSKLCP AANTLNEIFL  60
   61 IHFITFCQEK GVDEWLTTTK MTKHQAFLFG ADWIWTFWGS NKQIKLQLAV QTLQMSSPPP 120
  121 VESKPCDLSN PESRVEESSW KKSRFDKLEE FCNLIGEDCL GLFIIFGMPG KPKDIRGVVL 180
  181 DSVKSQMVRS HLPGGKAVAQ FVLETEDCVF IKELLRNCLS KKDGLREVGK VYISIL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits