YRC Public Data Repository - Protein Structure Prediction

Protein:	SEC24C
Organism:	Homo sapiens
Length:	1094 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEC24C.

Description	E-value	Query Range	Subject Range
gi\|114631255, gi... - gi\|114631255\|ref\|XP_001145134.1\| PREDICTED: SEC24-related protein C isoform 11 [Pan troglodytes], gi...	0.0	[1..1094]	[1..1094]
SEC24C - SEC24 family, member C (S. cerevisiae)	0.0	[1..1094]	[1..1094]
gi\|197101962 - gi\|197101962\|ref\|NP_001126728.1\| SEC24-related protein C [Pongo abelii] gi\|55732471 - gi\|55732471\|emb\|CAH92936.1\| hypothetical protein [Pongo abelii]	0.0	[1..1094]	[1..1095]
gi\|28916673, gi\|... - gi\|28916673\|ref\|NP_766184.1\| Sec24 related gene family, member C [Mus musculus], gi\|25955503\|gb\|AAH4...	0.0	[1..1094]	[1..1096]
gi\|73952943 - gi\|73952943\|ref\|XP_862842.1\| PREDICTED: similar to SEC24-related protein C isoform 4 [Canis familiar...	0.0	[1..1094]	[1..1096]
gi\|76656555 - gi\|76656555\|ref\|XP_586458.2\| PREDICTED: similar to SEC24-related protein C isoform 1 [Bos taurus]	0.0	[1..1094]	[1..1094]

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Predicted Domain #1

Region A:
Residues: [1-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVNQSVPPV PPFGQPQPIY PGYHQSSYGG QSGSTAPAIP YGAYNGPVPG YQQTPPQGMS  60
   61 RAPPSSGAPP ASTAQAPCGQ AAYGQFGQGD VQNGPSSTVQ MQRLPGSQPF GSPLAPVGNQ 120
  121 PPVLQPYGPP PTSAQVATQL SGMQISGAVA PAPPSSGLGF GPPTSLASAS GSFPNSGLYG 180
  181 SYPQGQAPPL SQAQGHPGIQ TPQRSAPSQA SSFTPPASGG PRLPSMTGPL LPGQSFGGPS 240
  241 VSQPNHVSSP PQALPPGTQM TGPLGPLPPM HSPQQPGYQP QQNGSFGPAR GPQSNYGGPY 300
  301 PAAPTFGSQP GPPQPLPPKR LDPDAIPSPI QVIEDDRNNR GT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.69897
Match:	1y0fB
Description:	No description for 1y0fB was found.

Predicted Domain #2

Region A:
Residues: [343-1094]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPFVTGVRGQ VPPLVTTNFL VKDQGNASPR YIRCTSYNIP CTSDMAKQAQ VPLAAVIKPL  60
   61 ARLPPEEASP YVVDHGESGP LRCNRCKAYM CPFMQFIEGG RRFQCCFCSC INDVPPQYFQ 120
  121 HLDHTGKRVD AYDRPELSLG SYEFLATVDY CKNNKFPSPP AFIFMIDVSY NAIRTGLVRL 180
  181 LCEELKSLLD FLPREGGAEE SAIRVGFVTY NKVLHFYNVK SSLAQPQMMV VSDVADMFVP 240
  241 LLDGFLVNVN ESRAVITSLL DQIPEMFADT RETETVFVPV IQAGMEALKA AECAGKLFLF 300
  301 HTSLPIAEAP GKLKNRDDRK LINTDKEKTL FQPQTGAYQT LAKECVAQGC CVDLFLFPNQ 360
  361 YVDVATLSVV PQLTGGSVYK YASFQVENDQ ERFLSDLRRD VQKVVGFDAV MRVRTSTGIR 420
  421 AVDFFGAFYM SNTTDVELAG LDGDKTVTVE FKHDDRLNEE SGALLQCALL YTSCAGQRRL 480
  481 RIHNLALNCC TQLADLYRNC ETDTLINYMA KFAYRGVLNS PVKAVRDTLI TQCAQILACY 540
  541 RKNCASPSSA GQLILPECMK LLPVYLNCVL KSDVLQPGAE VTTDDRAYVR QLVTSMDVTE 600
  601 TNVFFYPRLL PLTKSPVEST TEPPAVRASE ERLSNGDIYL LENGLNLFLW VGASVQQGVV 660
  661 QSLFSVSSFS QITSGLSVLP VLDNPLSKKV RGLIDSLRAQ RSRYMKLTVV KQEDKMEMLF 720
  721 KHFLVEDKSL SGGASYVDFL CHMHKEIRQL LS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2nupB
Description:	No description for 2nupB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits